Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2390
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    26   0.33 
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    26   0.33 
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    24   1.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   3.1  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   4.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   9.3  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +2

Query: 53  KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKY 178
           KN++ +++Y+   K R   +T+    K   +   N YN   Y
Sbjct: 273 KNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNY 314


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +2

Query: 53  KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKY 178
           KN++ +++Y+   K R   +T+    K   +   N YN   Y
Sbjct: 284 KNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNY 325


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 645 NMQTKRCEPLCTSALNFWIXHH 580
           N  TK+ E L  SA+ +W+  H
Sbjct: 89  NGLTKKQEMLVRSAIKYWVERH 110


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +2

Query: 113 TDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAY 229
           TD   RK ++ +++ K ++    ++V + N+D    +AY
Sbjct: 288 TDTLIRKYIIPKEQVKEDSLYTNIVVDIRNEDCGSAIAY 326


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -2

Query: 638 KPKDVSPCVL 609
           KPKDVS CVL
Sbjct: 214 KPKDVSNCVL 223


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 672 LFKTXHVFSNMQTKRCEPLCTSALNFWIXHHSQGI 568
           LF    VFSN ++K+      + LNF + + ++G+
Sbjct: 33  LFMIGGVFSNNKSKKYFEQTLNELNFNLNYVNKGV 67


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -2

Query: 350  VLIADQLNMLQHNLSDQPSHHNVATHVNKQRTQ 252
            V+   +   L   +S    HHNV  H    RTQ
Sbjct: 1661 VISDSESGRLDTEMSTWGYHHNVNKHCTIHRTQ 1693


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 556 IPSKDSLAMMXNPKVQC*STQGLT 627
           +PSKDSL  + N   Q  + Q LT
Sbjct: 296 LPSKDSLVFVDNHDTQRDNPQILT 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,991
Number of Sequences: 438
Number of extensions: 3963
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)