Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2389
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   6.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   6.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   6.7  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 523 LSINKIEKLWNQKKYVY 473
           LSI  +E++W    Y Y
Sbjct: 109 LSIKMLERIWRPDTYFY 125


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 365 NDNLLLFHKNSMYIFFWLCTRVL 297
           ND +L FH  +  +  W+ T V+
Sbjct: 259 NDRILYFHSLASRVESWVNTSVI 281


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 511 KIEKLWNQKKYVYYLWLAC 455
           K+ K +  +KY+Y L  AC
Sbjct: 430 KLFKTFKDRKYLYMLMEAC 448


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,803
Number of Sequences: 438
Number of extensions: 3125
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)