Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2378
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    27   0.23 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   1.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   5.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   5.0  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
 Frame = +2

Query: 440 PVPASGPIPPEDKDVTN-----NKKKQRTASSAPKSSWLMPKDR 556
           P P    + PE K++ N     N  K+ TAS A K  W+  ++R
Sbjct: 132 PSPEWDTVTPEAKNLINQMLTVNPSKRITASEALKHPWICQRER 175


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 467 AESGQTQVPEYSSK*RPAVHLTSVASP 387
           AES  +  P++  +  P+ HL  ++SP
Sbjct: 35  AESSASNSPDHYERFSPSTHLMDLSSP 61


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 245 LLIFLIVGSNTRPSGQSLVVATPSTHSKNL 156
           LL FL++ S TRPS  +   A PS+   N+
Sbjct: 7   LLFFLLLSSCTRPSRGN---AVPSSQRGNV 33


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 245 LLIFLIVGSNTRPSGQSLVVATPSTHSKNL 156
           LL FL++ S TRPS  +   A PS+   N+
Sbjct: 7   LLFFLLLSSCTRPSRGN---AVPSSQRGNV 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,894
Number of Sequences: 438
Number of extensions: 4261
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)