Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2372
         (480 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   1.3  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   3.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.9  

>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 114 WETRDGDKVKGKAS 73
           W  RDG+K KGK S
Sbjct: 3   WINRDGEKWKGKMS 16


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 329 QFLLAGSLLRGGNRQGGGTYPVGPQNAQLPV 237
           +F+L  SLL  GN    G    G Q  Q P+
Sbjct: 4   EFVLLASLLYLGNESVHGIQKWGTQFGQAPL 34


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 95  SPSLVSQCSFSSPV*GSFTE*SKEYFGCA*NIYST 199
           SPS   QC+ ++ +     + S+    CA + YST
Sbjct: 744 SPSPAEQCASTTTITARSPQGSQGLLQCATSNYST 778


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,570
Number of Sequences: 438
Number of extensions: 2623
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)