Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2370
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   1.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   1.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   1.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.8  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 313 CGVTTSPPRVIXASGFKN 366
           C +   PPRVI +SG K+
Sbjct: 626 CNLGLEPPRVILSSGAKS 643


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 313 CGVTTSPPRVIXASGFKN 366
           C +   PPRVI +SG K+
Sbjct: 626 CNLGLEPPRVILSSGAKS 643


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 313 CGVTTSPPRVIXASGFKN 366
           C +   PPRVI +SG K+
Sbjct: 626 CNLGLEPPRVILSSGAKS 643


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 450 NVAHRKRKTGKVG 488
           NVA R   TGKVG
Sbjct: 923 NVASRMESTGKVG 935


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -1

Query: 514 SSXVRRWGNPTFPVLR 467
           S  + +WGNP  P+++
Sbjct: 836 SPNLTKWGNPNRPIVQ 851


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 532 WNLFXASSXVRRWGNPTFPVLRFLCATL 449
           WN    +  +  W +P  P+LR    TL
Sbjct: 530 WNPLTDTVPIHTWIHPWLPLLRNRLDTL 557


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,951
Number of Sequences: 438
Number of extensions: 2401
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)