Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2357
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.9  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   8.5  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   8.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   8.5  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 215 PKSLILMNLDNFCRSHGQVPAT 280
           P+ L  +NL + CR HG  PAT
Sbjct: 430 PRELEAVNLGSACRIHGS-PAT 450


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 403  SKEGSRRANYPLPARGGSDEK*RYG 477
            +K  S+ AN P PA GG   + + G
Sbjct: 1014 AKPQSQEANKPKPATGGKGTRPKRG 1038


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 613 KKLVVAFCAPXCRC 654
           K L +  CAP C C
Sbjct: 60  KPLCIKICAPGCVC 73


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 613 KKLVVAFCAPXCRC 654
           K L +  CAP C C
Sbjct: 60  KPLCIKICAPGCVC 73


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 44  LRRYREWLNISVLVPXILLSYL 109
           LRR   +  ++++VP + +SYL
Sbjct: 231 LRRKTLFYTVNLIVPCVSISYL 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,195
Number of Sequences: 438
Number of extensions: 4236
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)