Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2347
         (450 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   2.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   6.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   6.2  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 34  YGISLYFKLKDKDRNLSFISNVK 102
           Y +  YF+   +D  LSF+  +K
Sbjct: 83  YSMDCYFRQSWRDSRLSFLGPIK 105


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 271 GDRAAGSTLLAENRRRXSFQYVPQPVQNWTRIICN 375
           GD ++G+TLL E     S + + +P  +     CN
Sbjct: 729 GDSSSGTTLLLELDDIASMEILYKPGDHLGVFACN 763


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 28  FGYGISLYFKLKDKDRNLS 84
           FG+ ++   K  DK+R+LS
Sbjct: 504 FGHPLNKSLKYSDKERDLS 522


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,529
Number of Sequences: 438
Number of extensions: 2461
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)