Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2346
         (423 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   0.46 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   2.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   3.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   10.0 

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.6 bits (51), Expect = 0.46
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -2

Query: 200 IHNVNTCDSFSYNTDLGQFRSNSTSNF 120
           IHN N  ++ +YN +   + +N+ +N+
Sbjct: 323 IHNNNNYNNNNYNNNYNNYNNNNYNNY 349


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 240 NKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 347
           NK+  P   +    +  RK  T  +  I +RKE +K
Sbjct: 778 NKEQSPNSTKETTPKKERKTATTTQPVISSRKEQKK 813


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = -3

Query: 352 DFFLISFLVLIFASCLVRALRIARVFLALKSK 257
           DF + S L   +  C++       +F AL+++
Sbjct: 342 DFIIYSSLSSFYIPCIIMVFLYYNIFKALRNR 373


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 210 MKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHE 314
           +K  +++  K K  +  DL AKK R++   LT HE
Sbjct: 736 VKSTIQSLMKLKSPEWKDL-AKKARSVNHLLTHHE 769


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 59  KGAIQTA*GAKDRINKSS 112
           KG+I    GA+D  NK++
Sbjct: 190 KGSISNIDGAEDHCNKTA 207


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,901
Number of Sequences: 438
Number of extensions: 1342
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)