Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2337
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   3.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   8.5  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -1

Query: 646 PPCLRVSVCNTLRGISRYRRSSHQLLRIFQQGSSYWR 536
           PP  ++S C+T   +S       +L  +    SS WR
Sbjct: 418 PPIRKISDCSTTSSLSGDESDVVELQPVKSSKSSGWR 454


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 469 QQKTENLKTCFLNLKQSFPTVESANNLSLVE 561
           +Q+T++L   F  L++  PT+ S + LS ++
Sbjct: 263 RQRTQSLNEAFAALRKIIPTLPS-DKLSKIQ 292


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 78  SQHTGSENRYQDSLPHHCNKET 13
           SQ     N+ +    HHCN++T
Sbjct: 51  SQPHQDHNKEKSKNNHHCNQDT 72


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 476 FCXKHSGPPSAMNKAIRSPSL 414
           F  K  GPP+  N  I SPS+
Sbjct: 349 FQSKDQGPPNDGNGNILSPSI 369


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,555
Number of Sequences: 438
Number of extensions: 3458
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)