Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2336
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    29   0.032
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    27   0.23 
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    25   0.52 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.69 
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   2.8  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   2.8  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   3.7  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   4.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   4.9  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 29.5 bits (63), Expect = 0.032
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +3

Query: 27  LLRHMKSHQARANGNLVCVPCNRKFSSIATFKQHMKMSMKHISEND 164
           L RH+++   R +   +C  C R +SS+ + + H  +  +  S+N+
Sbjct: 18  LRRHIQNVHTRPSKEPICNICKRVYSSLNSLRNHKSIYHRQHSKNE 63



 Score = 23.0 bits (47), Expect = 2.8
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +3

Query: 78  CVPCNRKFSSIATFKQHMK 134
           C PCN+  +S+   ++H++
Sbjct: 5   CEPCNKILTSLTRLRRHIQ 23


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 36  HMKSHQARANGNLV--CVPCNRKFSSIATFKQHMKM 137
           H+K+H     G     C  C+R+F  +A  ++H+++
Sbjct: 24  HLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRV 59


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -2

Query: 591 SHCIMELRTSILCLDVGDRNWA 526
           +HCI++  T+ L + VG+ +W+
Sbjct: 202 AHCIIDENTTKLAIVVGEHDWS 223


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 631 HYLPAHFLDWRVGQPLHNGTSNFDLMSRCG 542
           H+L  HF D +V    HN    F  +S  G
Sbjct: 512 HWLTLHFKDPKVESAFHNAEEAFSPLSLLG 541


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -1

Query: 526 CHKYGLRY 503
           CHKYGLR+
Sbjct: 54  CHKYGLRF 61


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = +3

Query: 24  NLLRHMKSHQARANGNLVCVPCNRKFSSIATFKQHMKM 137
           +L RH +    +++   VC  CNR++ +  +   H  +
Sbjct: 20  SLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSL 57


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +3

Query: 468 VGKLKAHLVVSRYRSPYL*QPNSYLPHRDIRSKFE--VPLCNGCPTLQSKKWA 620
           +G  K H     Y +P +  P+++LP +     +   VP   G  +   +K+A
Sbjct: 442 IGTFKLHRQPHIYPNPDVFDPDNFLPEKTANRHYYAFVPFSAGPRSCVGRKYA 494


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = +3

Query: 18  RGNLLRHMKSHQARANGNLVCVPCNRKFSSIATFKQHM 131
           + +L RH+    A       CV C R + S  +   H+
Sbjct: 18  KASLKRHVADKHAERQEEYRCVICERVYCSRNSLMTHI 55


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/34 (23%), Positives = 16/34 (47%)
 Frame = +3

Query: 27  LLRHMKSHQARANGNLVCVPCNRKFSSIATFKQH 128
           L RH +    +   + VC  C++ F ++ +   H
Sbjct: 387 LKRHKEQQHFQPLNSAVCALCHKVFRTLNSLNNH 420


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,137
Number of Sequences: 438
Number of extensions: 4660
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)