Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2331
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              30   0.022
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              30   0.022
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.9  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          21   7.8  

>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 29.9 bits (64), Expect = 0.022
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 318 KCIRRIFGAVQENEIWRTRYNQELYDIYKDPNIIKTI 208
           +CI + F  V E+  ++    QEL  IY D N+IK +
Sbjct: 64  ECILKQFNIVDESGNFKENIVQELTSIYLDENVIKKL 100


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 29.9 bits (64), Expect = 0.022
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 318 KCIRRIFGAVQENEIWRTRYNQELYDIYKDPNIIKTI 208
           +CI + F  V E+  ++    QEL  IY D N+IK +
Sbjct: 64  ECILKQFNIVDESGNFKENIVQELTSIYLDENVIKKL 100


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 430 LPHHSNRNALL-LHGRNRQSGGAYPCGLQR 344
           LP    ++ LL L+G NR+  G Y C ++R
Sbjct: 374 LPGTGRQSELLRLNGINREDRGMYQCIVRR 403


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 430 LPHHSNRNALL-LHGRNRQSGGAYPCGLQR 344
           LP    ++ LL L+G NR+  G Y C ++R
Sbjct: 374 LPGTGRQSELLRLNGINREDRGMYQCIVRR 403


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/42 (23%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -3

Query: 330 VMTLKCIRRIFGAVQE---NEIWRTRYNQELYDIYKDPNIIK 214
           V+T + +   + A +E   + ++ TR+N   Y  + DP++++
Sbjct: 288 VVTAQPVHSAYKAPEETIISSVFTTRHNATCYLSHVDPDVVQ 329


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 375 VVVPIRAVSKDVLLPVMTLKCIRRIFGAVQENE 277
           ++VP+  +       V+TLK +R+  GA    E
Sbjct: 74  LIVPVFTIVSSYAAIVLTLKKVRKRAGASGRRE 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,673
Number of Sequences: 438
Number of extensions: 4515
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)