Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2328
         (400 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    23   1.3  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    23   1.3  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           23   1.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   2.2  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   5.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   9.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   9.1  

>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 265 EPPEHXHDAERGRRHR 218
           EP EH  + ER  RHR
Sbjct: 27  EPLEHFENEERADRHR 42


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 265 EPPEHXHDAERGRRHR 218
           EP EH  + ER  RHR
Sbjct: 27  EPLEHFENEERADRHR 42


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 265 EPPEHXHDAERGRRHR 218
           EP EH  + ER  RHR
Sbjct: 2   EPLEHFENEERADRHR 17


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 237 SVAAVTGSEKSPPGGDXAPTMDXEPS 160
           S AA+T +  S PGG  +      PS
Sbjct: 72  SAAAITSTSPSYPGGGSSSPSPSSPS 97


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +2

Query: 251 VFWGLDKKLAQRKHXPSINW 310
           + W LD  +  + H  SI W
Sbjct: 21  MIWALDCSIKPKDHNGSIYW 40


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = -2

Query: 351 KSSRARMYLLY 319
           K+++AR+YLLY
Sbjct: 225 KNAQARVYLLY 235


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 237 SVAAVTGSEKSPPGGDXAPT 178
           S++A+  + +SP GG   P+
Sbjct: 393 SMSALVSAVRSPAGGQLPPS 412


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,294
Number of Sequences: 438
Number of extensions: 890
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)