Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2325
         (374 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   3.6  
DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex det...    21   6.3  
DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex det...    21   6.3  
DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex det...    21   6.3  
DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex det...    21   6.3  
DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex det...    21   6.3  
DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    21   6.3  
DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex det...    21   6.3  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   6.3  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   6.3  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   6.3  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   6.3  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   6.3  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   6.3  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   6.3  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   6.3  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   6.3  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   6.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   8.3  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 332 GQGAFGNMCRG 364
           G G FG++CRG
Sbjct: 640 GGGEFGDVCRG 650


>DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 360 RHMLPKAP*PDLWVPPPRTR 301
           RH+ P  P P  ++PP   R
Sbjct: 120 RHIGPLTPFPPRFIPPDMYR 139


>DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 360 RHMLPKAP*PDLWVPPPRTR 301
           RH+ P  P P  ++PP   R
Sbjct: 120 RHIGPLTPFPPRFIPPDMYR 139


>DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 360 RHMLPKAP*PDLWVPPPRTR 301
           RH+ P  P P  ++PP   R
Sbjct: 120 RHIGPLTPFPPRFIPPDMYR 139


>DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 360 RHMLPKAP*PDLWVPPPRTR 301
           RH+ P  P P  ++PP   R
Sbjct: 120 RHIGPLTPFPPRFIPPDMYR 139


>DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 360 RHMLPKAP*PDLWVPPPRTR 301
           RH+ P  P P  ++PP   R
Sbjct: 120 RHIGPLTPFPPRFIPPDMYR 139


>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 360 RHMLPKAP*PDLWVPPPRTR 301
           RH+ P  P P  ++PP   R
Sbjct: 120 RHIGPLTPFPPRFIPPDMYR 139


>DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 360 RHMLPKAP*PDLWVPPPRTR 301
           RH+ P  P P  ++PP   R
Sbjct: 120 RHIGPLTPFPPRFIPPDMYR 139


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 360 RHMLPKAP*PDLWVPPPRTR 301
           RH+ P  P P  ++PP   R
Sbjct: 369 RHIGPLTPFPPRFIPPDMYR 388


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 360 RHMLPKAP*PDLWVPPPRTR 301
           RH+ P  P P  ++PP   R
Sbjct: 369 RHIGPLTPFPPRFIPPDMYR 388


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 360 RHMLPKAP*PDLWVPPPRTR 301
           RH+ P  P P  ++PP   R
Sbjct: 369 RHIGPLTPFPPRFIPPDMYR 388


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 360 RHMLPKAP*PDLWVPPPRTR 301
           RH+ P  P P  ++PP   R
Sbjct: 369 RHIGPLTPFPPRFIPPDMYR 388


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 360 RHMLPKAP*PDLWVPPPRTR 301
           RH+ P  P P  ++PP   R
Sbjct: 369 RHIGPLTPFPPRFIPPDMYR 388


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 360 RHMLPKAP*PDLWVPPPRTR 301
           RH+ P  P P  ++PP   R
Sbjct: 369 RHIGPLTPFPPRFIPPDMYR 388


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 360 RHMLPKAP*PDLWVPPPRTR 301
           RH+ P  P P  ++PP   R
Sbjct: 368 RHIGPLTPFPPRFIPPDMYR 387


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 360 RHMLPKAP*PDLWVPPPRTR 301
           RH+ P  P P  ++PP   R
Sbjct: 353 RHIGPLTPFPPRFIPPDMYR 372


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 360 RHMLPKAP*PDLWVPPPRTR 301
           RH+ P  P P  ++PP   R
Sbjct: 369 RHIGPLTPFPPRFIPPDMYR 388


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +2

Query: 155 KAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSA 262
           K P++   + D+ + M    RQP+ +   A  + +A
Sbjct: 59  KLPVKAITLPDLSIPMQLGRRQPFSLFIPAHRKIAA 94


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +3

Query: 198  LCPRTRGSLTA*ARRLVTKPVPNHGVPDVLSPEF 299
            L   T  SLT   R   T   P HG      PEF
Sbjct: 1374 LTATTTNSLTMKVRPHPTDNAPIHGYTIHYKPEF 1407


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,651
Number of Sequences: 438
Number of extensions: 2020
Number of successful extensions: 24
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)