Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2318
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    22   7.1  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   7.1  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    22   7.1  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   7.1  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    21   9.3  

>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 476 PKFDMFKLPPSLERFTPENMY 538
           P+F     P S  RF P N Y
Sbjct: 373 PRFRYIGPPTSFPRFIPPNAY 393


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 476 PKFDMFKLPPSLERFTPENMY 538
           P+F     P S  RF P N Y
Sbjct: 373 PRFRYIGPPTSFPRFIPPNAY 393


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 476 PKFDMFKLPPSLERFTPENMY 538
           P+F     P S  RF P N Y
Sbjct: 373 PRFRYIGPPTSFPRFIPPNAY 393


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 476 PKFDMFKLPPSLERFTPENMY 538
           P+F     P S  RF P N Y
Sbjct: 362 PRFRYIGPPTSFPRFIPPNAY 382


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 405 SLCRAKLS*LMRTGGHISCLGC 470
           S C A    L + GGH   +GC
Sbjct: 58  SACAANCLSLGKAGGHCEKVGC 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,908
Number of Sequences: 438
Number of extensions: 4937
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)