Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2316
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   4.5  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   5.9  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    21   7.8  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   7.8  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.8  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    21   7.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.8  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/18 (38%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -3

Query: 307 RPPF-VWQLNSPSASHSC 257
           RP +  W+LN+ ++ H+C
Sbjct: 8   RPSYCTWELNATNSPHTC 25


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = -2

Query: 341 IHPNTPRVSAIASSFR 294
           IHP  PR+ ++ ++++
Sbjct: 160 IHPGDPRIKSVVTAYK 175


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
          protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 37 EAFFDEYDYYNFD 75
          E + D+YDY N D
Sbjct: 21 ELYSDKYDYVNID 33


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +1

Query: 160 SGHSRKIVTKLMNAEHNKKTSNTKH*MDC 246
           +G S+KI+ ++ N   N +  N +  ++C
Sbjct: 37  TGTSQKIIDEVYNGNVNVEDENVQSYVEC 65


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 506 EIRHWNGVTSKIYRLTAWLICGVVPF 429
           E+RH   V +K Y     L  G+V F
Sbjct: 395 ELRHSRPVPAKKYDCVTLLFSGIVGF 420


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
          protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 37 EAFFDEYDYYNFD 75
          E + D+YDY N D
Sbjct: 21 ELYSDKYDYVNID 33


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 506 EIRHWNGVTSKIYRLTAWLICGVVPF 429
           E+RH   V +K Y     L  G+V F
Sbjct: 395 ELRHSRPVPAKKYDCVTLLFSGIVGF 420


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,901
Number of Sequences: 438
Number of extensions: 3324
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)