Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2311
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    42   7e-06

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 41.5 bits (93), Expect = 7e-06
 Identities = 36/172 (20%), Positives = 62/172 (36%), Gaps = 1/172 (0%)
 Frame = +3

Query: 48  IRMHKFVALFLIATVIPLKTNANIFGGKCSRQDPNVDACLLXSFNNLVDYLKGGAPEMGI 227
           IR      + ++A  + L  N  I      +++ N   C+  +  + V  L GG     I
Sbjct: 7   IRFFVLTTMLMMAIAVELPNNWRICDRSLPQKEYN--QCIAEAVRDAVVSLAGGLKSFKI 64

Query: 228 EEAEPIVIDELSIALGAGPDGYRATFKDIHA-SXASNMTITNVRSDLETHQFQLTLYGPH 404
              EP+ +D + I    G    R  +K+I       N+ I N   D +        Y P 
Sbjct: 65  LPIEPLAVDSVKIGESQGSVTLRQEYKNIKLYGLTKNLEIKNYNIDWDKCILSSESYNPQ 124

Query: 405 ISARARYXXXXXXXXXXXXXGGEYWGEYHGVXAXVYXRGAPYERDGRTYLKL 560
           +   A Y              G+     + + +        YE++G TYL++
Sbjct: 125 VDFVADYKIEGKVLLLPVRGAGKSNITMYDLKSHNDIYCEKYEKNGETYLRI 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,849
Number of Sequences: 438
Number of extensions: 2863
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)