Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2309
         (450 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   2.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   4.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   4.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.2  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 132 ILLAESKPTCSELQNEF 182
           ++L  SKP C+E   EF
Sbjct: 402 VMLVPSKPMCAEAFQEF 418


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 300 WRYT*SQLNTPYCSYNLKTSILLF 371
           WR    Q  T Y  +NL  S LLF
Sbjct: 59  WRNPSMQTPTNYYLFNLAVSDLLF 82


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 169 CKTNLESISHT 201
           CK  +ES+SHT
Sbjct: 177 CKLQMESLSHT 187


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 296 PVALHIKPTEYPVLQ 340
           P+ +H+ PT Y +L+
Sbjct: 623 PLRIHVSPTTYILLK 637


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,414
Number of Sequences: 438
Number of extensions: 1935
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)