Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2307
         (400 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   3.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   3.9  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   5.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   9.1  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    20   9.1  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -3

Query: 383 FSVITPWVETFIIIRFICAIHN 318
           +  ITP ++  + I   C +HN
Sbjct: 312 YKYITPLIQKHLKIHDTCGVHN 333


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 351 ECLNPWRDDTEEEQL 395
           + L  W DD++EE+L
Sbjct: 34  QMLGIWADDSDEEEL 48


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 205 ELFRRSLSTLRPSFTVKY 258
           E FRR +ST+   F V+Y
Sbjct: 451 EKFRRWVSTMSRPFEVRY 468


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 147 HAEAMASLPP 176
           HA++ ASLPP
Sbjct: 291 HAKSQASLPP 300


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 214 RRSLSTLRPSFTVKYMHSNANMKNF 288
           R   S +  S + K +H+N N KN+
Sbjct: 308 RSKESKIISSLSNKTIHNNNNYKNY 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,580
Number of Sequences: 438
Number of extensions: 1640
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)