Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2306
         (400 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              23   1.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   3.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   3.9  

>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 120 TVQSVCLGQXGVARRV 167
           TVQSVC+ + G A+++
Sbjct: 28  TVQSVCMKEIGTAQQI 43


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 276 HFXTRLKLLAASTVGKLCP 332
           H  +   LLAA+  G LCP
Sbjct: 519 HHASSAPLLAATLAGGLCP 537


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 175 MNLXSDSAMFAGVGVEHSWRDFTIQ 249
           +NL  D  +   V +EH W+D   Q
Sbjct: 60  LNL-KDQILTTNVWLEHEWQDHKFQ 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,878
Number of Sequences: 438
Number of extensions: 1918
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)