Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2297
         (750 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT007415-1|AAP36083.1|  494|Homo sapiens splicing factor, argini...    31   4.4  
BC002781-1|AAH02781.1|  494|Homo sapiens splicing factor, argini...    31   4.4  
AL590729-1|CAI14326.1|  494|Homo sapiens splicing factor, argini...    31   4.4  
AL357500-1|CAH71635.1|  494|Homo sapiens splicing factor, argini...    31   4.4  
AB209856-1|BAD93093.1|  419|Homo sapiens splicing factor, argini...    31   4.4  
AF042838-1|AAC97073.1| 1495|Homo sapiens MEK kinase 1 protein.         30   7.7  

>BT007415-1|AAP36083.1|  494|Homo sapiens splicing factor,
           arginine/serine-rich 4 protein.
          Length = 494

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 439 SENGGTAVSRSSTPHPVTEAQANAPLRSRHDQFLAS-TTERTQQRQSSSGRNPSVS 603
           SEN GT     S     ++++ N P  SR     AS T  R++ R  S+ R+PS S
Sbjct: 431 SENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRS 486


>BC002781-1|AAH02781.1|  494|Homo sapiens splicing factor,
           arginine/serine-rich 4 protein.
          Length = 494

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 439 SENGGTAVSRSSTPHPVTEAQANAPLRSRHDQFLAS-TTERTQQRQSSSGRNPSVS 603
           SEN GT     S     ++++ N P  SR     AS T  R++ R  S+ R+PS S
Sbjct: 431 SENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRS 486


>AL590729-1|CAI14326.1|  494|Homo sapiens splicing factor,
           arginine/serine-rich 4 protein.
          Length = 494

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 439 SENGGTAVSRSSTPHPVTEAQANAPLRSRHDQFLAS-TTERTQQRQSSSGRNPSVS 603
           SEN GT     S     ++++ N P  SR     AS T  R++ R  S+ R+PS S
Sbjct: 431 SENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRS 486


>AL357500-1|CAH71635.1|  494|Homo sapiens splicing factor,
           arginine/serine-rich 4 protein.
          Length = 494

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 439 SENGGTAVSRSSTPHPVTEAQANAPLRSRHDQFLAS-TTERTQQRQSSSGRNPSVS 603
           SEN GT     S     ++++ N P  SR     AS T  R++ R  S+ R+PS S
Sbjct: 431 SENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRS 486


>AB209856-1|BAD93093.1|  419|Homo sapiens splicing factor,
           arginine/serine-rich 4 variant protein.
          Length = 419

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 439 SENGGTAVSRSSTPHPVTEAQANAPLRSRHDQFLAS-TTERTQQRQSSSGRNPSVS 603
           SEN GT     S     ++++ N P  SR     AS T  R++ R  S+ R+PS S
Sbjct: 356 SENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRS 411


>AF042838-1|AAC97073.1| 1495|Homo sapiens MEK kinase 1 protein.
          Length = 1495

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = +1

Query: 544  STTERTQQRQSSSGRNPSVSFESXPLXYHRQIATGSLLTSFHRESSAFVPGGTNKIDASC 723
            +TTE+ +    + GR  S    S PL +H Q+   +L T     S+  VP GT   D S 
Sbjct: 930  TTTEQPKPMVQTKGRPHSQCLNSSPLSHHSQLMFPALSTP--SSSTPSVPAGT-ATDVSK 986

Query: 724  H 726
            H
Sbjct: 987  H 987


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,290,398
Number of Sequences: 237096
Number of extensions: 2209105
Number of successful extensions: 3982
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3964
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)