Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2297
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             29   0.047
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   4.0  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 29.1 bits (62), Expect = 0.047
 Identities = 19/83 (22%), Positives = 34/83 (40%)
 Frame = +1

Query: 370  LPERRRVEPAHDR*LSDDLW*KMSENGGTAVSRSSTPHPVTEAQANAPLRSRHDQFLAST 549
            +PE  R   + D+ LS  +    S+     +    + HP  +AQA    + +  Q     
Sbjct: 784  IPEVMRRLMSEDKRLSKSVNGDQSQPPHQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQ 843

Query: 550  TERTQQRQSSSGRNPSVSFESXP 618
             ++ QQ+Q    R P  + +  P
Sbjct: 844  QQQQQQQQQQQQRGPMTNDDFNP 866


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 428 HKSSLSYRSCAGSTLR-RSGSPDSTH 354
           H+SS +  +C+G T+R  +G P  +H
Sbjct: 283 HRSSSASTTCSGHTVRCFTGGPRKSH 308


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 28  MRSFCHGSTNQNN*KKKH 81
           M + C  S NQNN + KH
Sbjct: 579 MNTRCANSDNQNNNQNKH 596


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,676
Number of Sequences: 438
Number of extensions: 4084
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)