Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2288
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   1.1  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     25   1.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.2  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    23   4.3  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    23   4.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   4.3  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   4.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 543 IENGEQQEEPDDWLRFGNPWEKARPEFML 629
           I+NG+      +W  F NPW K + EF++
Sbjct: 379 IQNGDYVVLETEWSSFINPWTK-KLEFVV 406


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 543 IENGEQQEEPDDWLRFGNPWEKARPEFML 629
           I+NG+      +W  F NPW K + EF++
Sbjct: 85  IQNGDYVVLETEWSSFINPWTK-KLEFVV 112


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 306 YSTPRTNSRLS*DHFHNSIVEYES 235
           +S  RT ++L   +FH++ + YES
Sbjct: 26  FSFLRTRTKLQPTYFHHTYIIYES 49


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 306 YSTPRTNSRLS*DHFHNSIVEYES 235
           +S  RT ++L   +FH++ + YES
Sbjct: 26  FSFLRTRTKLQPTYFHHTYIIYES 49


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 162 RNVATPRDYYFALAHTV 212
           +N+ TP DYY+ + HT+
Sbjct: 166 KNITTPWDYYY-IYHTL 181


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 162 RNVATPRDYYFALAHTV 212
           +N+ TP DYY+ + HT+
Sbjct: 181 KNITTPWDYYY-IYHTL 196


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 633 VNFYGSVVDTPDGKKWIDTQXGFAMPYDNP 722
           V+  GSV+D PD    +++Q    M   +P
Sbjct: 148 VDHQGSVLDGPDSPPLVESQMHHQMHTQHP 177


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 162 RNVATPRDYYFALAHTV 212
           +N+ TP DYY+ + HT+
Sbjct: 69  KNITTPWDYYY-IYHTL 84


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = -2

Query: 261 HNSIVEYESTWRQDDLSRCVREQNSNPAGSQHFDLS 154
           +  + EY+ TW   D+  C     S   GS    L+
Sbjct: 155 YTPVCEYDHTWWPYDILNCTIHIASWSHGSNEIKLN 190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,555
Number of Sequences: 438
Number of extensions: 5177
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)