Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2287
         (530 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   1.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   3.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   5.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.9  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +1

Query: 115 LNDFDDNPVE-KLTNKDDCARLFEFDNDAPLIMENKDYREIVGLNR 249
           LN    N  E +   K+   RLF  D DA  +     + E +GL R
Sbjct: 435 LNHLRANVAEGRNQRKNVLDRLFRMDRDAVYLQPGMSFGEPLGLRR 480


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +1

Query: 379 VESANQNKPSSSPEXKRATIVGNPDVSHAEE 471
           + SA  +  SSSP  K A   G P   +  E
Sbjct: 517 IASAPSSSTSSSPPAKGAAAAGQPSKRNGGE 547


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 52  APYVTSRDISQYKRDSDPMQNLNDF 126
           AP+ T R +  Y ++SD   +LN++
Sbjct: 284 APFHTQRLLYVYAQESDYYPDLNEW 308


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 319 GLPDMQIRYKNKAKEPKGDFVESANQNKPSSSPE 420
           G P  Q+ +K  A +  GD+ +    N P  S E
Sbjct: 704 GFPKPQVTWKKAAGDTPGDYTDLKLSN-PDISVE 736


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.132    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,945
Number of Sequences: 438
Number of extensions: 2791
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.3 bits)