Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2282
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.57 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   7.0  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 127 FTSKVIICLNKHIMKLVMLLPSSLMFHNLILIIMCVSMLAIG 2
           F  + I CL     K +  LP   M+ + I  I+ V  LAIG
Sbjct: 50  FRFEAIQCLQSSAFKEIKTLPDRGMWSSKIEFILSVVGLAIG 91


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 112 IICLNKHIMKLVMLLPSSLMFHNLILIIMCVSMLAIG 2
           I CL     K +  LP   M+ + I  I+ V  LAIG
Sbjct: 2   IQCLQSSAFKEIKTLPDRGMWSSKIEFILSVVGLAIG 38


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 146 EKNLPSHFSVTRHIFPLRAIFFVFMSMIIKS 238
           EK+LP   SV   IFP   +F     MI++S
Sbjct: 198 EKHLPIGASVLFEIFPFCIVF--GSDMIVRS 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,598
Number of Sequences: 438
Number of extensions: 2503
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)