Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2255
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    31   0.097
SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces pom...    28   1.2  
SPCC1235.11 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   3.7  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   4.8  
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    25   6.4  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    25   8.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   8.5  

>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 31.5 bits (68), Expect = 0.097
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +2

Query: 275 DVTQLAWEDLEDMGIVRLGHQKKILLAIKRVK 370
           D+  L+  DL DMGI  +GH+  IL AI+ +K
Sbjct: 40  DIDLLSSNDLRDMGIESVGHRIDILSAIQSMK 71


>SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 105 PTAVRSSGVILVMVGRSYPASMKSRAYSS 19
           P AV    V+  M+GR Y  +  SR YSS
Sbjct: 14  PAAVLVGAVVGFMIGRKYSVADASRGYSS 42


>SPCC1235.11 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 141

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 198 KEPGM*SGKLSGTLRLASSAFNLLRWL 118
           K+P + SG+++G L L SS F    W+
Sbjct: 56  KDPRLISGRMTGALILYSSVFMRYAWM 82


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +1

Query: 22  GVRAALHRGWVRSADHNKDDSRGPHGCRHQETQP--PQEVKGRARQSQR 162
           G R A +R W  S+  + DDS G   C+     P   Q  K + R+S +
Sbjct: 250 GGRNANYRKWYFSSSMDIDDSVGLQNCKFSSNGPKIKQAKKKQKRKSNK 298


>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -3

Query: 373 VFHSFNGKQYFLLVTKPHYSHV--LKILPSELSDV-VHGXIALRH 248
           VFH F    Y +L+ +  +SH     I+   L ++ VH  +  RH
Sbjct: 98  VFHDFGNLNYSVLMNREEFSHTENASIMIQALRNLGVHARLNQRH 142


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
            Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 186  M*SGKLSGTLRLASSAFNLLRWLGFLMPTAVRSSGV 79
            M S +L   +RL S+++NL RW+      AVR+ G+
Sbjct: 1098 MFSERLDNLVRLQSTSYNLNRWV------AVRTDGI 1127


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 482 YHKPPDLNFDAPXDXIMXX*SWDPIXIPXAXXQI 583
           YH+P ++ F  P D  +    WDPI  P    Q+
Sbjct: 351 YHQPSNV-FVPPEDPDLPAFFWDPIINPITSRQL 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,832
Number of Sequences: 5004
Number of extensions: 42324
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)