Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2255
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    33   0.002
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   1.3  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    22   5.3  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   7.0  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 33.5 bits (73), Expect = 0.002
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 2    LADLQMEEYARLFIEAGYD-LPTITRMTPEDLTAVGIKKPNHRKRL 136
            LA ++M  YA  F  +G   L    R+T ++LTA+G+    H+K++
Sbjct: 931  LASIKMSRYAESFERSGVTTLEAAARVTVQELTALGVTLVGHQKKI 976



 Score = 29.5 bits (63), Expect = 0.026
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +2

Query: 233  YGPALVAQGYRTVHDVTQLAWEDLEDMGIVRLGHQKKILLAIKRVK 370
            Y  +    G  T+    ++  ++L  +G+  +GHQKKI+ ++  ++
Sbjct: 939  YAESFERSGVTTLEAAARVTVQELTALGVTLVGHQKKIMNSVTALR 984


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 64  DHNKDDSRGPHGCRHQETQ 120
           DHNK+ S+  H C +Q+T+
Sbjct: 56  DHNKEKSKNNHHC-NQDTE 73


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
 Frame = -2

Query: 512 RQSLD----QEVYDNSSPTGNAPSDINPGP 435
           R SLD    Q VYD +  TG+A   +N  P
Sbjct: 53  RPSLDIDYKQRVYDKNGMTGDAYGGLNIRP 82


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 221 VEDATILLRNPVCSLANYPVR*DWRALPLTSCG 123
           ++  +  L+N +C +A  PV  +    PL S G
Sbjct: 240 IDGESFTLKNGICGMALSPVTNNLYYSPLASHG 272


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,043
Number of Sequences: 438
Number of extensions: 3122
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)