Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2253
         (350 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    23   0.79 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   3.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    20   9.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   9.8  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 23.4 bits (48), Expect = 0.79
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 282 AVRPCPRPTFVDKRSR 235
           A+RP  RPT V KR++
Sbjct: 2   AIRPVYRPTIVKKRTK 17


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +2

Query: 194 NYLGVID*TTPIAQRDRLSTNVGRGHGRTAPWPRGG 301
           NY    D  T I +  R     GRGHG+     RGG
Sbjct: 64  NYWQCNDKKTDIEETGR---GKGRGHGKGGSRGRGG 96


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 112 PVEDSKEIASSTTEYSTNDHE 174
           P +D+K   S +T    N+HE
Sbjct: 432 PKKDNKRKLSDSTMNKINNHE 452


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +1

Query: 1   SLVTISIRFVINLYIADL 54
           +L T++  F+++L +ADL
Sbjct: 216 ALQTVTNYFIVSLAVADL 233


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,986
Number of Sequences: 438
Number of extensions: 1231
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)