Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2239
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     25   0.57 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   3.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.3  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 664 QPSXIVLQLEVFIFKTFTIYTAPSSSITLGKITTLDHEIF 545
           QPS      + F +   T+   P   +TL K+T+  HE F
Sbjct: 452 QPSIRTYTQQQFPYVHDTLQIQPQEQLTLSKVTSNYHEEF 491


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +2

Query: 356 EIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENF 481
           E+P   K   +   ++ I  D    I + + G  VP+  E+F
Sbjct: 157 ELPNDEKSLFENGVEIGINFDKYDNIQVNVSGDNVPQPIESF 198


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 524 SLCTPPPQVSELVER 480
           S  TPPPQV E+ ++
Sbjct: 685 SATTPPPQVDEVDDK 699


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = -3

Query: 652 IVLQLEVFIFKTFTIYTAPSSSITLGKITTLDHEIFNYSVELAPFVPLPL 503
           + L LE  + +       P S++ +  +T  D+E   Y   L   + LP+
Sbjct: 74  LTLDLEYELVENLQANEKPWSTLPIEDLTKSDNEDITYPTVLEVQLNLPI 123


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = -3

Query: 652 IVLQLEVFIFKTFTIYTAPSSSITLGKITTLDHEIFNYSVELAPFVPLPL 503
           + L LE  + +       P S++ +  +T  D+E   Y   L   + LP+
Sbjct: 112 LTLDLEYELVENLQANEKPWSTLPIEDLTKSDNEDITYPTVLEVQLNLPI 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,413
Number of Sequences: 438
Number of extensions: 4024
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)