Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2227
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    28   0.081
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   1.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   4.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   4.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.2  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 27.9 bits (59), Expect = 0.081
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
 Frame = +1

Query: 388 PVPASGPIPPEDKDVTN-----NKKKQRTASSAPKSXWLMPKDRSSLTPSSPHPNDC 543
           P P    + PE K++ N     N  K+ TAS A K  W+  ++R +         DC
Sbjct: 132 PSPEWDTVTPEAKNLINQMLTVNPSKRITASEALKHPWICQRERVASVVHRQETVDC 188


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 415 AESGQTQVPEYSSK*RPAVHLTSVASP 335
           AES  +  P++  +  P+ HL  ++SP
Sbjct: 35  AESSASNSPDHYERFSPSTHLMDLSSP 61


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/52 (23%), Positives = 21/52 (40%)
 Frame = +1

Query: 379 TSTPVPASGPIPPEDKDVTNNKKKQRTASSAPKSXWLMPKDRSSLTPSSPHP 534
           + TP   + P PP      ++ K  +    A K   ++   RS  + + P P
Sbjct: 335 SDTPPKPAPPPPPPSSSGPDSAKLDKIFDIATKENAMLLSGRSQKSTTGPPP 386


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 25  RQSLQLQAPNSSAPLKTASMKTTDNATSSSNVSMES 132
           + SL L    S+  L  A  +     TSSSNV+  S
Sbjct: 507 KDSLGLSTATSTCSLAVAKQQNQVPLTSSSNVNNNS 542


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 193 LLIFLIVGSNTRPSGQSLVVATPSTHSKNL 104
           LL FL++ S TRPS  +   A PS+   N+
Sbjct: 7   LLFFLLLSSCTRPSRGN---AVPSSQRGNV 33


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 193 LLIFLIVGSNTRPSGQSLVVATPSTHSKNL 104
           LL FL++ S TRPS  +   A PS+   N+
Sbjct: 7   LLFFLLLSSCTRPSRGN---AVPSSQRGNV 33


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -3

Query: 295 GWAKNPLRRGHCELGLGGWSSVLSPQSTLKGWSHLLIFLIVGSNTR 158
           GW+   L     E  + G  SV    + +KG+    + L V +N R
Sbjct: 377 GWSARGLVSDGNEAEVEGTLSVQPQANPVKGFEEYFLNLTVENNRR 422


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.123    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,824
Number of Sequences: 438
Number of extensions: 4385
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)