Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2226
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.57 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.3  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   3.0  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   7.0  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   7.0  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 87  HRNSLSGCPRADRSQLQPHSQELKCPTPGCDGSGHVTGNYSSH 215
           H+  ++ C  +D + L    Q     T G DGS  V GN S H
Sbjct: 238 HKLRVTRCYSSDSAVLSDEDQ-----TKGWDGSNMVEGNESDH 275


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 123  RSQLQPHSQELKCPTPGCDGSG 188
            ++Q +P SQE   P P   G G
Sbjct: 1011 QAQAKPQSQEANKPKPATGGKG 1032


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 32/117 (27%), Positives = 40/117 (34%), Gaps = 7/117 (5%)
 Frame = +1

Query: 196 PATIPHTGPS-PAARGPTSRRANPETARIRSL*AHRAVQLRIGIKCGSWRVAEPSNNTRL 372
           P  IP   P  P  R     +A P   R   +   R    R+  +  S   AEP NN  +
Sbjct: 47  PIYIPQPRPPHPRLRREAEPKAEPGNNRPIYIPQPRPPHPRLRREAES--EAEPGNNRPV 104

Query: 373 LWPQP------LQRSNSME*TVQRPVVMDLAT*MDPF*RIGRSPGCPXARTPPXLTP 525
             PQP      L+R    E    RPV +       P  R+ R P        P   P
Sbjct: 105 YIPQPRPPHPRLRREPEAEPGNNRPVYIPQP--RPPHPRLRREPEAEPGNNRPVYIP 159



 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 346 AEPSNNTRLLWPQP 387
           AEP NN  +  PQP
Sbjct: 40  AEPGNNRPIYIPQP 53


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +3

Query: 153 LKCPTPGCDGSGHVTGNYSSHRSLSGCPRANKPKSKPR 266
           +K P     G   ++GN   + +  G P A  P  K R
Sbjct: 25  VKTPLGAIKGYYKISGNGKQYEAYEGIPYALPPVGKFR 62


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +3

Query: 153 LKCPTPGCDGSGHVTGNYSSHRSLSGCPRANKPKSKPR 266
           +K P     G   ++GN   + +  G P A  P  K R
Sbjct: 25  VKTPLGAIKGYYKISGNGKQYEAYEGIPYALPPVGKFR 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,798
Number of Sequences: 438
Number of extensions: 4303
Number of successful extensions: 32
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)