Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2217
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    24   1.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   7.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   7.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.3  

>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 568 IHRRHHGKTGRPHETRRR 515
           + R H+GK G P E R R
Sbjct: 7   VKRSHNGKNGSPEEKRPR 24


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -2

Query: 710 ILNIITFCSYVFHLXIRVWSSFCRRC 633
           ++ +   C   F + + +WS FC +C
Sbjct: 340 VMGVFIICWLPFFV-VNLWSGFCSQC 364


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/41 (21%), Positives = 22/41 (53%)
 Frame = +3

Query: 621 IQLSAAAAKRTPHPDTQMKDVTTKSNDVQNPYVPLXEEFXN 743
           +Q+   AA++  H   + + +  + + +QN Y+P  ++  N
Sbjct: 620 VQVIEDAAQKKKHRAIRPEPIDAQFDIIQNIYIPEPQDIEN 660


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = +3

Query: 87  SRRHSLFLPCCKTP 128
           + RH  + PCC  P
Sbjct: 208 AERHKKYYPCCDEP 221


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 360 RPRLHSTTCCGYLISLN 410
           R R HS +CC  L S+N
Sbjct: 347 RSRRHSDSCCLCLDSMN 363


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +2

Query: 614 HANSAQRSGGKTNSTPGYXNERRNYKK**CSKSIRAPR 727
           H+ S+     +    PGY    ++ KK  C++   AP+
Sbjct: 285 HSKSSDYGFTECRCDPGYFRAEKDPKKMPCTQPPSAPQ 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,155
Number of Sequences: 438
Number of extensions: 4016
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)