Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2214
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    25   1.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.1  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   5.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   7.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.3  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 503 KYYTTNPEEACL 538
           KYYTTN   ACL
Sbjct: 125 KYYTTNESHACL 136


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +2

Query: 182 LFIVISLVLTVVFNAFSGPLPRTSVYESIDLNKRSKVVLSRNAPFSQIRSANCTYW 349
           L I   L +T +       LPR S  ++ID+      V    A   +  + N TYW
Sbjct: 276 LGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFV-FAALLEYAAVNYTYW 330


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +3

Query: 294 YYHAMLRFRRFDLRI 338
           Y+++++RFRRF + +
Sbjct: 26  YFNSLVRFRRFTIEL 40


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 231 VVLCRGLVFTSLLI 272
           +++C GLVF  +LI
Sbjct: 769 LIICSGLVFVQILI 782


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 182 LFIVISLVLTVVFNAFSGPLPRTSVYESIDL 274
           L +   L +T + ++ +  LP+ S  +SID+
Sbjct: 255 LGVTTVLTMTTLMSSTNAALPKISYVKSIDV 285


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 182 LFIVISLVLTVVFNAFSGPLPRTSVYESIDL 274
           L +   L +T + ++ +  LP+ S  +SID+
Sbjct: 255 LGVTTVLTMTTLMSSTNAALPKISYVKSIDV 285


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 182 LFIVISLVLTVVFNAFSGPLPRTSVYESIDL 274
           L +   L +T + ++ +  LP+ S  +SID+
Sbjct: 194 LGVTTVLTMTTLMSSTNAALPKISYVKSIDV 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,410
Number of Sequences: 438
Number of extensions: 4007
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)