Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2210
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   294   4e-82
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   290   5e-81
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   175   2e-46
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   142   2e-36
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    31   0.008
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   0.88 
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.0  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.7  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   8.2  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   8.2  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   8.2  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  294 bits (721), Expect = 4e-82
 Identities = 139/143 (97%), Positives = 139/143 (97%)
 Frame = +3

Query: 12  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 191
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 192 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGT 371
           DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV AGT
Sbjct: 61  DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 120

Query: 372 GEFEAGISXNGQTREHALLXFTL 440
           GEFEAGIS NGQTREHALL FTL
Sbjct: 121 GEFEAGISKNGQTREHALLAFTL 143



 Score = 31.9 bits (69), Expect = 0.004
 Identities = 13/15 (86%), Positives = 13/15 (86%)
 Frame = +2

Query: 473 KMDSTEPPYSEPXFE 517
           KMDSTEPPYSE  FE
Sbjct: 154 KMDSTEPPYSETRFE 168



 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +1

Query: 442 GXKQLIVGVNK 474
           G KQLIVGVNK
Sbjct: 144 GVKQLIVGVNK 154


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  290 bits (712), Expect = 5e-81
 Identities = 137/143 (95%), Positives = 138/143 (96%)
 Frame = +3

Query: 12  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 191
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 192 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGT 371
           DKLKAERERGITIDIALWKFET+KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV AG 
Sbjct: 61  DKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGI 120

Query: 372 GEFEAGISXNGQTREHALLXFTL 440
           GEFEAGIS NGQTREHALL FTL
Sbjct: 121 GEFEAGISKNGQTREHALLAFTL 143



 Score = 28.7 bits (61), Expect = 0.041
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 473 KMDSTEPPYSEPXFE 517
           KMD T+PPYSE  FE
Sbjct: 154 KMDMTDPPYSEARFE 168



 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +1

Query: 442 GXKQLIVGVNK 474
           G KQLIVGVNK
Sbjct: 144 GVKQLIVGVNK 154


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  175 bits (427), Expect = 2e-46
 Identities = 83/86 (96%), Positives = 83/86 (96%)
 Frame = +3

Query: 183 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVX 362
           WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 60

Query: 363 AGTGEFEAGISXNGQTREHALLXFTL 440
           AGTGEFEAGIS NGQTREHALL FTL
Sbjct: 61  AGTGEFEAGISKNGQTREHALLAFTL 86



 Score = 31.9 bits (69), Expect = 0.004
 Identities = 13/15 (86%), Positives = 13/15 (86%)
 Frame = +2

Query: 473 KMDSTEPPYSEPXFE 517
           KMDSTEPPYSE  FE
Sbjct: 97  KMDSTEPPYSETRFE 111



 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +1

Query: 442 GXKQLIVGVNK 474
           G KQLIVGVNK
Sbjct: 87  GVKQLIVGVNK 97


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  142 bits (345), Expect = 2e-36
 Identities = 67/70 (95%), Positives = 67/70 (95%)
 Frame = +3

Query: 231 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTGEFEAGISXNGQT 410
           DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV AGTGEFEAGIS NGQT
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 60

Query: 411 REHALLXFTL 440
           REHALL FTL
Sbjct: 61  REHALLAFTL 70



 Score = 31.9 bits (69), Expect = 0.004
 Identities = 13/15 (86%), Positives = 13/15 (86%)
 Frame = +2

Query: 473 KMDSTEPPYSEPXFE 517
           KMDSTEPPYSE  FE
Sbjct: 81  KMDSTEPPYSETRFE 95



 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +1

Query: 442 GXKQLIVGVNK 474
           G KQLIVGVNK
Sbjct: 71  GVKQLIVGVNK 81


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 31.1 bits (67), Expect = 0.008
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +3

Query: 270 VTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTG 374
           VT +D PGH  FI     G    D  VL+V A  G
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDG 229



 Score = 25.4 bits (53), Expect = 0.38
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 24  KTHINIVVIGHVDSGKST 77
           K H  + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
          methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3

Query: 33 INIVVIGHVDSGKST 77
          INI  IGHV  GKST
Sbjct: 43 INIGTIGHVAHGKST 57


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 255 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 356
           T KYY    D P +  FIKN+   ++ +D   LI
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLI 327


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 255 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 356
           T KYY    D P +  FIKN+   ++ +D   L+
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLV 327


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 114 DKRTIEKFEKEAQEMG 161
           DK+   KFE+EA+++G
Sbjct: 112 DKKYRVKFEEEAKKLG 127


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 114 DKRTIEKFEKEAQEMG 161
           DK+   KFE+EA+++G
Sbjct: 112 DKKFRVKFEEEAKKLG 127


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 114 DKRTIEKFEKEAQEMG 161
           DK+   KFE+EA+++G
Sbjct: 112 DKKYRVKFEEEAKKLG 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,607
Number of Sequences: 438
Number of extensions: 2612
Number of successful extensions: 20
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)