Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2209
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    40   2e-05
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   6.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 39.5 bits (88), Expect = 2e-05
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
 Frame = +1

Query: 190 LLNVELQDNPIGNVEG-PFLVSPTLQYLDLSNCNITSINSQFFDNITTLMTVDLSNNPLK 366
           L  + L  N I +++   F     L+ LDLS   +TS+     D +  L T+DL  N + 
Sbjct: 409 LNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSVPDALRD-LALLKTLDLGENRIS 467

Query: 367 NLATGVFDILTSIETLKLNDCKLSNISEVLFXNAAHLQEFGIGR 498
           N   G F  L  +  L+L    + N+S  +  +  +LQ   + R
Sbjct: 468 NFYNGSFRNLDQLTGLRLIGNDIGNLSRGMLWDLPNLQILNLAR 511



 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = +3

Query: 45  MRRLQLADNRLTRVEREAFKGLEYLIDIDLSGNNISYVDPI 167
           +  L+L+DN+L  V  + F GL  L  + LSGN I+ +DP+
Sbjct: 385 LHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASIDPL 425



 Score = 32.3 bits (70), Expect = 0.003
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 45  MRRLQLADNRLTRVEREAFKGLEYLIDIDLSGNNISYV-DPIGVLGFPRFAKRGASRQSN 221
           + RL L+ N +  ++  AF+    L ++DLSGN ++ V D +  L   +    G +R SN
Sbjct: 409 LNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSVPDALRDLALLKTLDLGENRISN 468



 Score = 28.7 bits (61), Expect = 0.041
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +3

Query: 3   NNITTLKPFPNDIKM-RRLQLADNRLTRVEREAFKGLEYLIDIDLSGNNI 149
           N +T++     D+ + + L L +NR++     +F+ L+ L  + L GN+I
Sbjct: 441 NELTSVPDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDI 490



 Score = 27.1 bits (57), Expect = 0.13
 Identities = 23/102 (22%), Positives = 48/102 (47%)
 Frame = +1

Query: 172 FLDSRGLLNVELQDNPIGNVEGPFLVSPTLQYLDLSNCNITSINSQFFDNITTLMTVDLS 351
           F     LL + L +N I   +  F+    L++LD+    I S+ + +    + + T+D S
Sbjct: 545 FTSIASLLLLNLSENHIEWFDYAFIPG-NLKWLDIHGNFIESLGNYYKIRDSKVKTLDAS 603

Query: 352 NNPLKNLATGVFDILTSIETLKLNDCKLSNISEVLFXNAAHL 477
           +N +  L+     +  S+E L +N+  ++ +    F +  +L
Sbjct: 604 HNRITELSP--LSVPDSVELLFINNNYINLVRPNTFTDKVNL 643



 Score = 25.8 bits (54), Expect = 0.29
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 54  LQLADNRLTRVEREAFKGLEYLIDIDLSGNNISYVDPI 167
           L LA N++  VER AF+    L  I L GN +S ++ +
Sbjct: 507 LNLARNKVQHVERYAFERNMRLEAIRLDGNFLSDINGV 544



 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 394 LTSIETLKLNDCKLSNISEVLFXNAAHLQEFGI 492
           LTS+  L ++ CK+  I E  F     L++  +
Sbjct: 91  LTSLHELHVHGCKVLRIPEGAFQPLLELKKLTV 123


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 241 FLVSPTLQYLDLSNCNITSINSQ 309
           FL  PT+ Y  ++  +I SIN +
Sbjct: 25  FLGQPTIVYFHVTVLSIDSINEE 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,226
Number of Sequences: 438
Number of extensions: 3026
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)