Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2208
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   2.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.8  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   8.4  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   8.4  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   8.4  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   8.4  

>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 62  GRDNTRFXPAANXKRNQTHD 3
           G ++ ++  ++N  RN+THD
Sbjct: 204 GNESKKYATSSNSLRNRTHD 223


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 130 QXIVCYQCTVTTTSRCIMEDLPGHAA 207
           Q I  +  T+ +  R    D PGHAA
Sbjct: 180 QCIGAFDVTLESGERVTFLDTPGHAA 205


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -1

Query: 62  GRDNTRFXPAANXKRNQTH 6
           G+++ ++  ++N  RN+TH
Sbjct: 193 GKESKKYATSSNSLRNRTH 211


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -1

Query: 62  GRDNTRFXPAANXKRNQTH 6
           G+++ ++  ++N  RN+TH
Sbjct: 204 GKESKKYATSSNSLRNRTH 222


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -1

Query: 62  GRDNTRFXPAANXKRNQTH 6
           G+++ ++  ++N  RN+TH
Sbjct: 204 GKESKKYATSSNSLRNRTH 222


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -1

Query: 62  GRDNTRFXPAANXKRNQTH 6
           G+++ ++  ++N  RN+TH
Sbjct: 193 GKESKKYATSSNSLRNRTH 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,617
Number of Sequences: 438
Number of extensions: 2581
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)