Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2194
         (367 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    27   1.2  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   3.7  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   4.9  
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   4.9  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    24   6.4  

>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 88  GFHFYYTMVFLHPWKSIV 35
           GF  Y+ M+F H WK I+
Sbjct: 196 GFKKYFEMIFRHGWKYII 213


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 328 AHSPPDVKWXLEPIDXYNVNAPHTLRYI 245
           A  PP +K    P+D  N++A   L+ I
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLKKI 251


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 116  PVITQIIILRVSFLLHDGIPSPVEV 42
            P I QI++    F+ HD  P P+++
Sbjct: 1202 PEIIQILLNLAEFMEHDDKPLPIDI 1226


>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 330

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
 Frame = -3

Query: 110 ITQIIILRVSFLLHDGIPSPVEVNR-------EHLVXKDFIK 6
           + +++ +    LL + IP P  V+        EHLV KDF+K
Sbjct: 196 LKELLYIIEESLLKNAIPDPFSVSTYTLKSAFEHLVKKDFLK 237


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 190 AFRFEGWGSRCDYTETLXLYI 252
           AF  + W ++ D+ ETL  Y+
Sbjct: 434 AFLLQQWNTQLDFKETLLAYV 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,468,827
Number of Sequences: 5004
Number of extensions: 26303
Number of successful extensions: 52
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)