Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2191
(587 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 81 2e-16
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 81 2e-16
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 70 2e-13
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 70 2e-13
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 70 2e-13
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 54 2e-08
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 29 0.50
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 29 0.50
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 27 1.5
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 27 2.7
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 80.6 bits (190), Expect = 2e-16
Identities = 41/79 (51%), Positives = 48/79 (60%)
Frame = +2
Query: 161 LEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXXNYSTPXXXXXXXXXXXLAVLRFYKVD 340
LEDGRTLSDYNIQKESTLHLV Y+TP LAVL++YKV+
Sbjct: 50 LEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKTYTTPKKIKHKHKKVELAVLKYYKVE 109
Query: 341 ENGKIHRLRRECTGEQCGA 397
++G + RLRREC CGA
Sbjct: 110 DDGSVKRLRREC--PNCGA 126
Score = 70.1 bits (164), Expect = 2e-13
Identities = 33/39 (84%), Positives = 36/39 (92%)
Frame = +3
Query: 39 GKTITLEVEPSDXIENVKAKIQDKEGIPPNQQRLIFAWK 155
GKTITLEVE SD I+NVK+KIQDKEGIPP+QQRLIFA K
Sbjct: 10 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGK 48
Score = 30.3 bits (65), Expect = 0.22
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 405 FMAVMEDRHYCGKCHSTM 458
FMA +DR YCG+CH T+
Sbjct: 129 FMANHKDRLYCGRCHLTL 146
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 80.6 bits (190), Expect = 2e-16
Identities = 41/79 (51%), Positives = 48/79 (60%)
Frame = +2
Query: 161 LEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXXNYSTPXXXXXXXXXXXLAVLRFYKVD 340
LEDGRTLSDYNIQKESTLHLV Y+TP LAVL++YKV+
Sbjct: 50 LEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKTYTTPKKIKHKHKKVELAVLKYYKVE 109
Query: 341 ENGKIHRLRRECTGEQCGA 397
++G + RLRREC CGA
Sbjct: 110 DDGSVKRLRREC--PNCGA 126
Score = 70.1 bits (164), Expect = 2e-13
Identities = 33/39 (84%), Positives = 36/39 (92%)
Frame = +3
Query: 39 GKTITLEVEPSDXIENVKAKIQDKEGIPPNQQRLIFAWK 155
GKTITLEVE SD I+NVK+KIQDKEGIPP+QQRLIFA K
Sbjct: 10 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGK 48
Score = 30.3 bits (65), Expect = 0.22
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 405 FMAVMEDRHYCGKCHSTM 458
FMA +DR YCG+CH T+
Sbjct: 129 FMANHKDRLYCGRCHLTL 146
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 70.1 bits (164), Expect = 2e-13
Identities = 33/39 (84%), Positives = 36/39 (92%)
Frame = +3
Query: 39 GKTITLEVEPSDXIENVKAKIQDKEGIPPNQQRLIFAWK 155
GKTITLEVE SD I+NVK+KIQDKEGIPP+QQRLIFA K
Sbjct: 10 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGK 48
Score = 46.8 bits (106), Expect = 2e-06
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +2
Query: 161 LEDGRTLSDYNIQKESTLHLV 223
LEDGRTLSDYNIQKESTLHLV
Sbjct: 50 LEDGRTLSDYNIQKESTLHLV 70
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 70.1 bits (164), Expect = 2e-13
Identities = 33/39 (84%), Positives = 36/39 (92%)
Frame = +3
Query: 39 GKTITLEVEPSDXIENVKAKIQDKEGIPPNQQRLIFAWK 155
GKTITLEVE SD I+NVK+KIQDKEGIPP+QQRLIFA K
Sbjct: 10 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGK 48
Score = 46.8 bits (106), Expect = 2e-06
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +2
Query: 161 LEDGRTLSDYNIQKESTLHLV 223
LEDGRTLSDYNIQKESTLHLV
Sbjct: 50 LEDGRTLSDYNIQKESTLHLV 70
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 70.1 bits (164), Expect = 2e-13
Identities = 33/39 (84%), Positives = 36/39 (92%)
Frame = +3
Query: 39 GKTITLEVEPSDXIENVKAKIQDKEGIPPNQQRLIFAWK 155
GKTITLEVE SD I+NVK+KIQDKEGIPP+QQRLIFA K
Sbjct: 10 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGK 48
Score = 70.1 bits (164), Expect = 2e-13
Identities = 33/39 (84%), Positives = 36/39 (92%)
Frame = +3
Query: 39 GKTITLEVEPSDXIENVKAKIQDKEGIPPNQQRLIFAWK 155
GKTITLEVE SD I+NVK+KIQDKEGIPP+QQRLIFA K
Sbjct: 86 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGK 124
Score = 70.1 bits (164), Expect = 2e-13
Identities = 33/39 (84%), Positives = 36/39 (92%)
Frame = +3
Query: 39 GKTITLEVEPSDXIENVKAKIQDKEGIPPNQQRLIFAWK 155
GKTITLEVE SD I+NVK+KIQDKEGIPP+QQRLIFA K
Sbjct: 162 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGK 200
Score = 70.1 bits (164), Expect = 2e-13
Identities = 33/39 (84%), Positives = 36/39 (92%)
Frame = +3
Query: 39 GKTITLEVEPSDXIENVKAKIQDKEGIPPNQQRLIFAWK 155
GKTITLEVE SD I+NVK+KIQDKEGIPP+QQRLIFA K
Sbjct: 238 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGK 276
Score = 70.1 bits (164), Expect = 2e-13
Identities = 33/39 (84%), Positives = 36/39 (92%)
Frame = +3
Query: 39 GKTITLEVEPSDXIENVKAKIQDKEGIPPNQQRLIFAWK 155
GKTITLEVE SD I+NVK+KIQDKEGIPP+QQRLIFA K
Sbjct: 314 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGK 352
Score = 46.8 bits (106), Expect = 2e-06
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +2
Query: 161 LEDGRTLSDYNIQKESTLHLV 223
LEDGRTLSDYNIQKESTLHLV
Sbjct: 50 LEDGRTLSDYNIQKESTLHLV 70
Score = 46.8 bits (106), Expect = 2e-06
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +2
Query: 161 LEDGRTLSDYNIQKESTLHLV 223
LEDGRTLSDYNIQKESTLHLV
Sbjct: 126 LEDGRTLSDYNIQKESTLHLV 146
Score = 46.8 bits (106), Expect = 2e-06
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +2
Query: 161 LEDGRTLSDYNIQKESTLHLV 223
LEDGRTLSDYNIQKESTLHLV
Sbjct: 202 LEDGRTLSDYNIQKESTLHLV 222
Score = 46.8 bits (106), Expect = 2e-06
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +2
Query: 161 LEDGRTLSDYNIQKESTLHLV 223
LEDGRTLSDYNIQKESTLHLV
Sbjct: 278 LEDGRTLSDYNIQKESTLHLV 298
Score = 46.8 bits (106), Expect = 2e-06
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +2
Query: 161 LEDGRTLSDYNIQKESTLHLV 223
LEDGRTLSDYNIQKESTLHLV
Sbjct: 354 LEDGRTLSDYNIQKESTLHLV 374
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 54.0 bits (124), Expect = 2e-08
Identities = 20/39 (51%), Positives = 32/39 (82%)
Frame = +3
Query: 39 GKTITLEVEPSDXIENVKAKIQDKEGIPPNQQRLIFAWK 155
GK I L+++P+D + +K ++++KEGIPP+QQRLI+A K
Sbjct: 10 GKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGK 48
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 29.1 bits (62), Expect = 0.50
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 536 NPSYTAVASVPYRLEGTYLXVVVFEDHRAVTLPAV 432
NP+YT Y L TYL F++HR + AV
Sbjct: 144 NPAYTNSHQNSYSLNETYLSYDFFDNHRGASSSAV 178
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 29.1 bits (62), Expect = 0.50
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 36 RGKTITLEVEPSDXIENVKAKIQDKEGIPPNQQRLI 143
+GK LE+EP++ +K ++ +PP +Q++I
Sbjct: 9 QGKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVI 44
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 317 VLRFYKVDENGKIHRLR--RECTGEQCGARSVHGGDGGP 427
V+ Y+V+ NGK H+++ R G +HGG P
Sbjct: 255 VMESYEVEINGKTHQVKSIRNLCGHNLDPYIIHGGKSVP 293
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 173 VHLPSCFPSEDQPLLIGRDSLFVLNFSFHIL 81
VH+P FP DQ GR + +L+F +++
Sbjct: 501 VHVPLMFPCSDQTSSRGRAPIAILSFKSNLV 531
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,166,871
Number of Sequences: 5004
Number of extensions: 39065
Number of successful extensions: 112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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