Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2188
         (660 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR542186-1|CAG46983.1|  108|Homo sapiens TBCA protein.                 50   6e-06
CR542170-1|CAG46967.1|  108|Homo sapiens TBCA protein.                 50   6e-06
BT007354-1|AAP36018.1|  108|Homo sapiens tubulin-specific chaper...    50   6e-06
BC105285-1|AAI05286.1|  108|Homo sapiens tubulin folding cofacto...    50   6e-06
BC018210-1|AAH18210.1|  108|Homo sapiens tubulin folding cofacto...    50   6e-06

>CR542186-1|CAG46983.1|  108|Homo sapiens TBCA protein.
          Length = 108

 Score = 50.4 bits (115), Expect = 6e-06
 Identities = 20/43 (46%), Positives = 33/43 (76%)
 Frame = +1

Query: 46  QKNRIQRIKDEGQDEHNIRKQEEVLQESLMMVPDCQRRSVAPF 174
           Q+ +I++++ E  + ++I+KQ E+LQES MM+PDCQRR  A +
Sbjct: 33  QEEKIEKMRAEDGENYDIKKQAEILQESRMMIPDCQRRLEAAY 75



 Score = 34.7 bits (76), Expect = 0.30
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +3

Query: 552 RLIKAYTDLKTTLETEQDLKEHEEYITAEQVL 647
           RL  AY DL+  LE E+DL+E EEY  A  VL
Sbjct: 70  RLEAAYLDLQRILENEKDLEEAEEYKEARLVL 101


>CR542170-1|CAG46967.1|  108|Homo sapiens TBCA protein.
          Length = 108

 Score = 50.4 bits (115), Expect = 6e-06
 Identities = 20/43 (46%), Positives = 33/43 (76%)
 Frame = +1

Query: 46  QKNRIQRIKDEGQDEHNIRKQEEVLQESLMMVPDCQRRSVAPF 174
           Q+ +I++++ E  + ++I+KQ E+LQES MM+PDCQRR  A +
Sbjct: 33  QEEKIEKMRAEDGENYDIKKQAEILQESRMMIPDCQRRLEAAY 75



 Score = 34.7 bits (76), Expect = 0.30
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +3

Query: 552 RLIKAYTDLKTTLETEQDLKEHEEYITAEQVL 647
           RL  AY DL+  LE E+DL+E EEY  A  VL
Sbjct: 70  RLEAAYLDLQRILENEKDLEEAEEYKEARLVL 101


>BT007354-1|AAP36018.1|  108|Homo sapiens tubulin-specific chaperone
           a protein.
          Length = 108

 Score = 50.4 bits (115), Expect = 6e-06
 Identities = 20/43 (46%), Positives = 33/43 (76%)
 Frame = +1

Query: 46  QKNRIQRIKDEGQDEHNIRKQEEVLQESLMMVPDCQRRSVAPF 174
           Q+ +I++++ E  + ++I+KQ E+LQES MM+PDCQRR  A +
Sbjct: 33  QEEKIEKMRAEDGENYDIKKQAEILQESRMMIPDCQRRLEAAY 75



 Score = 34.7 bits (76), Expect = 0.30
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +3

Query: 552 RLIKAYTDLKTTLETEQDLKEHEEYITAEQVL 647
           RL  AY DL+  LE E+DL+E EEY  A  VL
Sbjct: 70  RLEAAYLDLQRILENEKDLEEAEEYKEARLVL 101


>BC105285-1|AAI05286.1|  108|Homo sapiens tubulin folding cofactor A
           protein.
          Length = 108

 Score = 50.4 bits (115), Expect = 6e-06
 Identities = 20/43 (46%), Positives = 33/43 (76%)
 Frame = +1

Query: 46  QKNRIQRIKDEGQDEHNIRKQEEVLQESLMMVPDCQRRSVAPF 174
           Q+ +I++++ E  + ++I+KQ E+LQES MM+PDCQRR  A +
Sbjct: 33  QEEKIEKMRAEDGENYDIKKQAEILQESRMMIPDCQRRLEAAY 75



 Score = 34.7 bits (76), Expect = 0.30
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +3

Query: 552 RLIKAYTDLKTTLETEQDLKEHEEYITAEQVL 647
           RL  AY DL+  LE E+DL+E EEY  A  VL
Sbjct: 70  RLEAAYLDLQRILENEKDLEEAEEYKEARLVL 101


>BC018210-1|AAH18210.1|  108|Homo sapiens tubulin folding cofactor A
           protein.
          Length = 108

 Score = 50.4 bits (115), Expect = 6e-06
 Identities = 20/43 (46%), Positives = 33/43 (76%)
 Frame = +1

Query: 46  QKNRIQRIKDEGQDEHNIRKQEEVLQESLMMVPDCQRRSVAPF 174
           Q+ +I++++ E  + ++I+KQ E+LQES MM+PDCQRR  A +
Sbjct: 33  QEEKIEKMRAEDGENYDIKKQAEILQESRMMIPDCQRRLEAAY 75



 Score = 34.7 bits (76), Expect = 0.30
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +3

Query: 552 RLIKAYTDLKTTLETEQDLKEHEEYITAEQVL 647
           RL  AY DL+  LE E+DL+E EEY  A  VL
Sbjct: 70  RLEAAYLDLQRILENEKDLEEAEEYKEARLVL 101


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,698,852
Number of Sequences: 237096
Number of extensions: 1343322
Number of successful extensions: 5903
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5903
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)