Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2182
         (700 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52962-1|AAD10838.1| 3321|Homo sapiens kendrin protein.                30   9.1  
AF515282-1|AAP46636.1| 3336|Homo sapiens pericentrin B protein.        30   9.1  
AB007862-1|BAA23698.3| 3284|Homo sapiens KIAA0402 protein.             30   9.1  

>U52962-1|AAD10838.1| 3321|Homo sapiens kendrin protein.
          Length = 3321

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 19/86 (22%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
 Frame = +1

Query: 64   SVKNDINTAEIALR-QGFQEVSDGIGKWYARTEQINELQASLQHFQEN-------FGAQI 219
            ++K D+  ++ A+  +  +E +  +   Y R+ +I EL+A++++ QEN          +I
Sbjct: 1669 NLKLDMQNSQTAVSLRELEEENTSLKVIYTRSSEIEELKATIENLQENQKRLQKEKAEEI 1728

Query: 220  QKLNETLHFIKPADTIAAPSVEETQN 297
            ++L+E +  ++   ++  P V E  +
Sbjct: 1729 EQLHEVIEKLQHELSLMGPVVHEVSD 1754


>AF515282-1|AAP46636.1| 3336|Homo sapiens pericentrin B protein.
          Length = 3336

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 19/86 (22%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
 Frame = +1

Query: 64   SVKNDINTAEIALR-QGFQEVSDGIGKWYARTEQINELQASLQHFQEN-------FGAQI 219
            ++K D+  ++ A+  +  +E +  +   Y R+ +I EL+A++++ QEN          +I
Sbjct: 1680 NLKLDMQNSQTAVSLRELEEENTSLKVIYTRSSEIEELKATIENLQENQKRLQKEKAEEI 1739

Query: 220  QKLNETLHFIKPADTIAAPSVEETQN 297
            ++L+E +  ++   ++  P V E  +
Sbjct: 1740 EQLHEVIEKLQHELSLMGPVVHEVSD 1765


>AB007862-1|BAA23698.3| 3284|Homo sapiens KIAA0402 protein.
          Length = 3284

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 19/86 (22%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
 Frame = +1

Query: 64   SVKNDINTAEIALR-QGFQEVSDGIGKWYARTEQINELQASLQHFQEN-------FGAQI 219
            ++K D+  ++ A+  +  +E +  +   Y R+ +I EL+A++++ QEN          +I
Sbjct: 1707 NLKLDMQNSQTAVSLRELEEENTSLKVIYTRSSEIEELKATIENLQENQKRLQKEKAEEI 1766

Query: 220  QKLNETLHFIKPADTIAAPSVEETQN 297
            ++L+E +  ++   ++  P V E  +
Sbjct: 1767 EQLHEVIEKLQHELSLMGPVVHEVSD 1792


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,918,870
Number of Sequences: 237096
Number of extensions: 1590024
Number of successful extensions: 3516
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3516
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)