Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2178
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce...   178   5e-46
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    28   0.84 
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    25   5.9  

>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score =  178 bits (433), Expect = 5e-46
 Identities = 86/169 (50%), Positives = 113/169 (66%)
 Frame = +1

Query: 1   RYTPLKESWLKILPRLLNTYCYK*GFNTKTRNVEIKVGPEXKDIANLQKAADFVKAFIYG 180
           R TPL+  W K+ P L+     +   NTK+R+VE++     KD   LQK  DFV+AF  G
Sbjct: 90  RMTPLRNVWPKLYPPLVEHLLLQVRMNTKSRSVELRESKATKDPGALQKGMDFVQAFALG 149

Query: 181 FEVXXXXXXXXXXXXFVESFEVKDVKPLNGDHLSRAIGRLAGKAGRTKFTIENVTKTRIV 360
           F++            ++++FE+KDVK L GDHLSRAIGR+AG+ G+TKF IEN ++TRIV
Sbjct: 150 FDIDDAIALLRLDDLYIDTFEIKDVKTLQGDHLSRAIGRIAGQGGKTKFAIENASRTRIV 209

Query: 361 LADSKIHILGSYQNIALARRAICNLIMGSPPSKVTGILRNVATRVAERI 507
           LADSKIHILG + NI +A+ A+ +LI+GSPP KV   LRN A R  ERI
Sbjct: 210 LADSKIHILGGFTNIRIAKDAVVSLILGSPPGKVYANLRNAAARAKERI 258


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +1

Query: 295 RLAGKAGRTKFTIENVTKTRIVLADSKIHILGSYQNIALARRAI 426
           RL G  G+T   +E +T+  I++  + + ++G Y+ +   RR +
Sbjct: 157 RLIGTNGQTLKALELLTQCYILVQGTTVAVMGGYKGLKEVRRIV 200


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -1

Query: 533 FIYNTFY--NYILSATLVATFLKIPVTF 456
           F++  FY  +YIL A L+  FL++  TF
Sbjct: 562 FLFACFYGLDYILCAELLQAFLRVVFTF 589


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,972,123
Number of Sequences: 5004
Number of extensions: 34099
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)