Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2156
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.7  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 382 HVDEDQQGFHALWHHRGLNAG 320
           HV ED++GF+      G+ +G
Sbjct: 775 HVKEDREGFYLCQASNGIGSG 795


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 382 HVDEDQQGFHALWHHRGLNAG 320
           HV ED++GF+      G+ +G
Sbjct: 771 HVKEDREGFYLCQASNGIGSG 791


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/43 (23%), Positives = 19/43 (44%)
 Frame = +3

Query: 399 RAWSSSPPLGNSSTLTRCSTLKMEVLCLGCTCFVTFPTTXSWW 527
           R W+ + P    S ++R     +  +   C+  ++FP    WW
Sbjct: 144 RYWAITDPFTYPSKMSRRRAAVLIAIVWICSSAISFPAIV-WW 185


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 315 SYPALSPRWC 344
           +YP L P+WC
Sbjct: 479 TYPTLLPQWC 488



 Score = 21.0 bits (42), Expect = 8.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 420 EEMSSRP*HPP 388
           E++ SRP HPP
Sbjct: 87  EQIGSRPLHPP 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,557
Number of Sequences: 438
Number of extensions: 3308
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)