Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2140
         (531 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   1.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   4.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   5.9  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 305 YRRAEPYPQLGHPSRGPRVN 364
           YR A P P +GH    P  N
Sbjct: 110 YRSASPSPGMGHMGHTPTPN 129


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 526 F*LETKNSNLIP*NCQCIYRARLNERGQGRL 434
           F ++ ++  LI  +C+CIY   +N    GRL
Sbjct: 169 FPMDRQSCPLILGSCKCIYVQSINLCMAGRL 199


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = -1

Query: 495 FPKIASVFIAHV*MSAAREDYESREPNRPFDSTCDERIH*YYD 367
           + KI S F+ +  +       E + P   F+S   ++++ Y+D
Sbjct: 424 YQKILSYFLRYKKLQPQYSQSELQMPGVKFESVNIDKLYTYFD 466


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,023
Number of Sequences: 438
Number of extensions: 2799
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)