Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2129
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 77 3e-15
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 48 1e-06
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 44 1e-05
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 40 4e-04
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 39 6e-04
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch... 34 0.014
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 33 0.032
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 30 0.30
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 30 0.30
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 28 0.91
SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom... 28 0.91
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 28 0.91
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 27 1.6
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 2.1
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 27 2.8
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 2.8
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 27 2.8
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2... 27 2.8
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 26 3.7
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa... 26 3.7
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 26 3.7
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 3.7
SPAC6G10.03c |||abhydrolase family protein, unknown biological r... 26 4.8
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 26 4.8
SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransfer... 25 6.4
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 25 6.4
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 25 6.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 8.5
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 25 8.5
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 76.6 bits (180), Expect = 3e-15
Identities = 36/62 (58%), Positives = 43/62 (69%)
Frame = +1
Query: 409 ITRTQMKEFREAFRLFDKDGDGTITKEELGRVMRSLGQFARVEELQDMLQXVDSDGDXNV 588
+T Q+ EFREAF LFD+D DG IT ELG VMRSLGQ ELQDM+ VD+DG+ +
Sbjct: 6 LTDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTI 65
Query: 589 SF 594
F
Sbjct: 66 DF 67
Score = 62.9 bits (146), Expect = 3e-11
Identities = 28/56 (50%), Positives = 41/56 (73%)
Frame = +1
Query: 427 KEFREAFRLFDKDGDGTITKEELGRVMRSLGQFARVEELQDMLQXVDSDGDXNVSF 594
+E REAF++FDKDG+G IT EEL V+ SLG+ EE+ DM++ D+DGD +++
Sbjct: 85 EEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINY 140
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 48.0 bits (109), Expect = 1e-06
Identities = 20/53 (37%), Positives = 35/53 (66%)
Frame = +1
Query: 409 ITRTQMKEFREAFRLFDKDGDGTITKEELGRVMRSLGQFARVEELQDMLQXVD 567
+T +Q++E +EAF L DKDGDG I +E++ ++ SL Q A + + M + ++
Sbjct: 42 LTSSQIQELKEAFALLDKDGDGNIGREDVKTMLTSLNQDASEDSINHMFESIN 94
Score = 28.3 bits (60), Expect = 0.91
Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Frame = +1
Query: 301 ITSISPSRSQRQVTFLKPAANTNLDRKASIIDESTGITRTQMK-EFREAFRLFDKDGDGT 477
+TS++ S+ + + + N ++ A + + + R + + EAF FD G
Sbjct: 74 LTSLNQDASEDSINHMFESINPPINLAAFLTAMGSMLCRISPRNDLLEAFSTFDDTQSGK 133
Query: 478 ITKEELGRVMRSLGQFARVEELQDMLQXVDSDG 576
I + + S+G +E++ +L+ S G
Sbjct: 134 IPISTMRDALSSMGDRMDPQEVESILRSYTSHG 166
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 44.4 bits (100), Expect = 1e-05
Identities = 23/56 (41%), Positives = 30/56 (53%)
Frame = +1
Query: 409 ITRTQMKEFREAFRLFDKDGDGTITKEELGRVMRSLGQFARVEELQDMLQXVDSDG 576
IT Q ++ EAF+LFD D D I EL MR+LG A E+ +L+ D G
Sbjct: 31 ITEEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTG 86
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 421 QMKEFREAFRLFDKDGDGTITKEELGRVM-RSLGQFARVEELQDMLQXVDSDGDXNVS 591
+ E + R FDK G G + E+ RVM + + +EE++ + D D +S
Sbjct: 71 EKSEVLKILRDFDKTGKGYLQMEDFVRVMTEKIVERDPLEEIKRAFELFDDDETGKIS 128
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 39.5 bits (88), Expect = 4e-04
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +1
Query: 358 ANTNLDRKASIIDESTGITRT-QMKEFREAFRLFDKDGDGTITKEELGRVMRSLGQFARV 534
A ++++ +++ G +EF + F++FDKD G I EL V+ SLG+
Sbjct: 53 AEVDMEQFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSN 112
Query: 535 EELQDMLQXVD-SDGDXN 585
EE+ ++L+ V DG N
Sbjct: 113 EEMDELLKGVPVKDGMVN 130
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = +1
Query: 418 TQMKEFREAFRLFDKDGDGTITKEELGRVMRSLGQFARVEELQDMLQXVDSDGD 579
T +++AF LFD+ G G I K +G ++R+ GQ + E+ ++ + ++ D
Sbjct: 3 TDDSPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIESTLPAEVD 56
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 38.7 bits (86), Expect = 6e-04
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +1
Query: 370 LDRKASIIDESTGITRTQMKE-FREAFRLFDKDGDGTITKEELGRVMRSLGQFARVEELQ 546
+D K + S + T+ +E + +AFR+FDKD G I + M++LG+ E+Q
Sbjct: 58 IDEKKFMSFVSNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQ 117
Query: 547 DMLQXVD 567
M+Q D
Sbjct: 118 LMVQEAD 124
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +1
Query: 412 TRTQMKEFREAFRLFDKDGDGTITKEELGRVMRSLG 519
++ Q E +EAF L+D D DG I +G V+RSLG
Sbjct: 4 SKEQTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLG 39
>SPAC1687.14c |||EF hand family protein, unknown
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 34.3 bits (75), Expect = 0.014
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 400 STGITRTQM-KEFREAFRLFDKDGDGTITKEELGRVMRSLGQFARVEELQDMLQXVDSDG 576
S R +M +E EAF LFD G I E+L R LG+ E+LQ ML ++G
Sbjct: 2 SVSTKRLEMDEEAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLMLDLAGTNG 61
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 33.1 bits (72), Expect = 0.032
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 217 PGPPDESSRPASKEPPTLAV-SPSGSQQSITSISPSRSQR 333
P PP S R ++ EPPT++V SPS S+T P S R
Sbjct: 1021 PLPPTASQRASAYEPPTVSVPSPSALSPSVTPQLPPVSSR 1060
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 29.9 bits (64), Expect = 0.30
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +1
Query: 223 PPDESSRPASKEPPTLAVSPSGSQQSITSISPSRSQRQVTFLKPAANTNLDRKASIIDES 402
PP + P++ TL+ +PS S SI I SR+ R +F K +++ +D +
Sbjct: 350 PPRNTVTPSTARSSTLSQNPSSSSNSIPLI--SRNLRDFSFFKRCLEEDIEPTLR-LDHA 406
Query: 403 TGIT 414
+G++
Sbjct: 407 SGLS 410
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 29.9 bits (64), Expect = 0.30
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +1
Query: 115 SKIFSAVNNF-FADSPLVNHIKGIMTRQTSNSGREPGPPDESSRPA-SKEPPTLAVSPSG 288
+K ++A +F + D+ ++ + + S +E P P + PT +VS S
Sbjct: 221 AKTYNAPGSFVYEDAEKLSQLSSSLISSFSEQPKEHSPATSKHEPEETPASPTPSVSAST 280
Query: 289 SQQSITSISPS 321
S++ TS++PS
Sbjct: 281 SRERSTSVAPS 291
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 28.3 bits (60), Expect = 0.91
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 256 EPPTLAVSPSGSQQSITSISPSRSQRQVTFLKPAANTN 369
+PP+L +SPS SQ S+ P Q+ L+P ++N
Sbjct: 316 QPPSLPISPSTSQNSVQPF-PFSIQQPPLHLEPPLSSN 352
>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 175
Score = 28.3 bits (60), Expect = 0.91
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 160 LVNHIKGIMTRQTSNSGREPGPPDESSRPASKEPPTLAVSPSG 288
L +H+ I+T+ T GR+ E R EPP L SG
Sbjct: 117 LCSHLYKIVTKTTKVEGRKCWTSGELLRLNGSEPPVLCAKASG 159
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 28.3 bits (60), Expect = 0.91
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +1
Query: 214 EPGPPDESSRPASKEPPTLAVSPSGSQQSITSISPSRSQRQVTFLKPAANTNLDRK 381
E P + +P+ P VSPS SQQ+ I S S + F +N+D++
Sbjct: 447 EEPPSNSDKQPSMSNGPKSEVSPSQSQQA-PLIQSSTSPVSLQFPPEVQGSNVDKR 501
Score = 25.0 bits (52), Expect = 8.5
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = +1
Query: 157 PLVNHIKGIMTRQTSNSGREPGPPDESSRPASKE----PPTLAVSPSGSQQSITSISPSR 324
P +N+ + S SGR+ P+ SS P+S E P L P + T S
Sbjct: 89 PALNNRIRSLNASKSQSGRKSLSPNPSSVPSSTETKASPTPLESKPQIVSDTTTETSNGT 148
Query: 325 SQRQ 336
S+R+
Sbjct: 149 SRRR 152
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 27.5 bits (58), Expect = 1.6
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 226 PDESSRPASKEPPTLAVSPSGSQQSITSISPSRSQ-RQVTFLKPAANTN 369
P +S A TL++ PSGS T SPSRS T+L + + N
Sbjct: 178 PTHTSTIAELAASTLSIFPSGSYAGSTFGSPSRSSIDSSTYLPRSKSVN 226
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 199 SNSGREPGPPDESSRPASKEPP-TLAVSPSGSQQSITSISPSRSQRQV 339
S+S P PP S+P S E T P +Q + S+ P+ + QV
Sbjct: 235 SSSSTPPPPPPRPSQPTSGESQNTNPRFPFSAQSFVFSVGPNGALHQV 282
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 26.6 bits (56), Expect = 2.8
Identities = 23/102 (22%), Positives = 44/102 (43%)
Frame = +1
Query: 184 MTRQTSNSGREPGPPDESSRPASKEPPTLAVSPSGSQQSITSISPSRSQRQVTFLKPAAN 363
+ R+ + P P P T + +PS + S SPS+ ++ ++ + P A
Sbjct: 243 LNRRRTKDNLTNNPEISLDEPIKALPSTTSDAPSSLLNTNVSSSPSKFRKFLSSVIP-AK 301
Query: 364 TNLDRKASIIDESTGITRTQMKEFREAFRLFDKDGDGTITKE 489
T+L K S + ST ++ + R + F + + +KE
Sbjct: 302 TDLSAKES-LTSSTRLSTSYKTRKRSSGVAFSSETVTSSSKE 342
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 26.6 bits (56), Expect = 2.8
Identities = 19/75 (25%), Positives = 30/75 (40%)
Frame = +1
Query: 190 RQTSNSGREPGPPDESSRPASKEPPTLAVSPSGSQQSITSISPSRSQRQVTFLKPAANTN 369
R NSG + + P P L S SQ TS+S + + + A + +
Sbjct: 358 RSLRNSGSDEDDQPSADSPTLMHPSDLISSLVNSQNQTTSVSDNTGPNE--NVNEAEHIS 415
Query: 370 LDRKASIIDESTGIT 414
D +AS + GI+
Sbjct: 416 EDEQASTATDVNGIS 430
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 439 EAFRLFDKDGDGTITKEELGRVMR 510
+ F FD+D DG + EEL + R
Sbjct: 311 DLFYQFDRDNDGALNNEELSALFR 334
>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = -1
Query: 210 ATIACLSGHDALDVIHQRRISEEVVHRGEYFTC 112
A + CL GH HQ R EV RG C
Sbjct: 10 ACVVCLRGHRGSSCQHQERALIEVRTRGRPLLC 42
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.2 bits (55), Expect = 3.7
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +1
Query: 187 TRQTSNSGREPGPPDESSRPASKEPPTLAVSPSGSQQSITSISPSRSQRQV--TFLKPA 357
T T+NSG G P +S P S T + S +G+ S + S + S +F KPA
Sbjct: 218 TSTTANSGFSFGKPATTSAPGSNTTVTPSSSITGTNDSKPAASNTGSAPTTGFSFGKPA 276
>SPBC776.12c |hsk1||serine/threonine protein kinase
Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 394 DESTGITRTQMKEFREAFRLFDKDGDGTIT 483
+E ITRT + E +E +RL +K G+GT +
Sbjct: 52 EEIENITRTFV-ELQENYRLIEKIGEGTFS 80
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 26.2 bits (55), Expect = 3.7
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Frame = +1
Query: 199 SNSGREPGPPDESSRPASKEPPTLAVSPSGSQQS----ITSIS--PSRSQRQVTFLKPAA 360
S+ + G P +S ++KEP + +SPS QS TSIS P + T P +
Sbjct: 93 SSGSSQTGSPSQSLS-SNKEPSSPGISPSNDSQSQNTNHTSISANPYVNNPSHTSRNPDS 151
Query: 361 NTNLDRKASIIDESTGITRTQM 426
++L+ + + S QM
Sbjct: 152 GSSLNTASHEVPSSKSDVNVQM 173
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 3.7
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +1
Query: 196 TSNSGREPGPPDESSRPASKEPPTLAVSPSGSQQSITSISPSRSQRQVTFLKPAANTNLD 375
TS++ PP SS + P + + + ITS + S +T A NT+
Sbjct: 1645 TSSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITS-STALNTSTP 1703
Query: 376 -RKASIIDESTGIT 414
+S+++ ST IT
Sbjct: 1704 ITSSSVLNSSTPIT 1717
>SPAC6G10.03c |||abhydrolase family protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1
Query: 127 SAVNNFFADSPLVNHIKGIMTRQTSNSGREPGPPDESSRP 246
SAV+ + PL N ++ Q +G EP P + P
Sbjct: 228 SAVHAVMDEPPLSNVTNEVLQTQEETTGLEPSRPSKPKNP 267
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 25.8 bits (54), Expect = 4.8
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +1
Query: 196 TSNSGREPGPPDESSRPASK-EPPTLAVSPSGSQ-QSITSISPSRSQRQVTFLKPA-ANT 366
T S P P +S P K E P+ V+ S S Q++ + +PS T P ANT
Sbjct: 81 TPKSAASPAPNPPASVPEKKVEAPSSTVAESTSTTQTVAAAAPSNPDTTATSEAPIDANT 140
>SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 209
Score = 25.4 bits (53), Expect = 6.4
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Frame = -1
Query: 429 FHLSPSYAGAL--IDNGSLSIEV-----GIGRRLQEGYLALGPR 319
F++ P+Y G I NG + GIGR L YL PR
Sbjct: 103 FYIKPNYPGRCSHICNGGFLVSPSHRSKGIGRNLANAYLYFAPR 146
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.4 bits (53), Expect = 6.4
Identities = 20/71 (28%), Positives = 28/71 (39%)
Frame = +1
Query: 109 STSKIFSAVNNFFADSPLVNHIKGIMTRQTSNSGREPGPPDESSRPASKEPPTLAVSPSG 288
STS V A+ N + TR+T N + GP S P E + + S
Sbjct: 259 STSPTSPYVGGIAANRQYANTLLPKPTRKTGNFYMKSGPMQSSMEPCIAE-SDIPIRQSL 317
Query: 289 SQQSITSISPS 321
S S+SP+
Sbjct: 318 SSTYYNSLSPN 328
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 6.4
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +1
Query: 136 NNFFADSPLVNHIKGIMTRQTSNSGREPGP-----PDESSRPASKEPPTLAVSPSGSQQS 300
NN F P + +KG QT+ + P P ESS ++K + +++ S S S
Sbjct: 165 NNVFVIPPYLTAMKGFEKSQTNATASVPEPSFLKKSKESSSSSNKFSVSESIANSYSNSS 224
Query: 301 ITSIS 315
I++ +
Sbjct: 225 ISAFT 229
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 8.5
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Frame = +1
Query: 130 AVNNFFADS-PLVNHIKGIMTRQTSNSGREPGPPDESSRPASKEPPTLAVSPSGSQQSIT 306
A+ FA P + HI S P P RP + PP ++ P S S
Sbjct: 100 ALGGLFAGGMPKLRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPP-SPASAP 158
Query: 307 SISPSRSQRQVTFLKPAA 360
I PS++ + L P A
Sbjct: 159 PI-PSKAPPIPSSLPPPA 175
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = -1
Query: 549 VLQFLDACELSETAH----YPPELLLRDGSVXIFVEETESFTKFFHL 421
+L+FL + L E H PPE ++G + ++E + +++F+L
Sbjct: 696 LLEFLSSDTLREYLHDVFFLPPEHAQKEGVLLKYIENSGLVSRYFYL 742
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,302,815
Number of Sequences: 5004
Number of extensions: 48108
Number of successful extensions: 201
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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