Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2129
(600 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 25 0.75
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 25 0.75
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 1.7
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.3
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.3
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.3
AM158085-1|CAJ43389.1| 171|Apis mellifera globin 1 protein. 22 4.0
AM158084-1|CAJ43388.1| 171|Apis mellifera globin 1 protein. 22 4.0
AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 22 5.3
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 21 7.0
AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein... 21 7.0
AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein... 21 7.0
AF080430-1|AAC28863.2| 208|Apis mellifera ribosomal protein S8 ... 21 7.0
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 21 9.2
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 24.6 bits (51), Expect = 0.75
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 282 FGQSAVDYIDLSIEVPAPGNL 344
FG+ +VD++D +P P NL
Sbjct: 306 FGRDSVDHVDFDEFLPPPPNL 326
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 24.6 bits (51), Expect = 0.75
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 298 SITSISPSRSQRQVTFLKPAANT 366
+I PSRS V+FL+P +NT
Sbjct: 545 TILEKKPSRSSTLVSFLQPFSNT 567
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 23.4 bits (48), Expect = 1.7
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = +1
Query: 193 QTSNSGREPGPPDESSRPASKEPPTLAVSPSGSQQSITSISPSRSQRQV 339
Q+ + + PP+ S P PP S + SQ I+ S +Q+
Sbjct: 29 QSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASGIHQMQQL 77
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 220 GPPDESSRPASKEPPTLAVSPSGSQQSITSI 312
G P + RPA+ E + ++ SG Q+ + +I
Sbjct: 371 GTPISTGRPATVEDTSASLPLSGMQEELHTI 401
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 220 GPPDESSRPASKEPPTLAVSPSGSQQSITSI 312
G P + RPA+ E + ++ SG Q+ + +I
Sbjct: 371 GTPISTGRPATVEDTSASLPLSGMQEELHTI 401
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 220 GPPDESSRPASKEPPTLAVSPSGSQQSITSI 312
G P + RPA+ E + ++ SG Q+ + +I
Sbjct: 371 GTPISTGRPATVEDTSASLPLSGMQEELHTI 401
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 220 GPPDESSRPASKEPPTLAVSPSGSQQSITSI 312
G P + RPA+ E + ++ SG Q+ + +I
Sbjct: 371 GTPISTGRPATVEDTSASLPLSGMQEELHTI 401
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 220 GPPDESSRPASKEPPTLAVSPSGSQQSITSI 312
G P + RPA+ E + ++ SG Q+ + +I
Sbjct: 371 GTPISTGRPATVEDTSASLPLSGMQEELHTI 401
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 220 GPPDESSRPASKEPPTLAVSPSGSQQSITSI 312
G P + RPA+ E + ++ SG Q+ + +I
Sbjct: 371 GTPISTGRPATVEDTSASLPLSGMQEELHTI 401
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.0 bits (47), Expect = 2.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 220 GPPDESSRPASKEPPTLAVSPSGSQQSITSI 312
G P + RPA+ E + ++ SG Q+ + +I
Sbjct: 439 GTPISTGRPATVEDTSASLPLSGMQEELHTI 469
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.0 bits (47), Expect = 2.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 220 GPPDESSRPASKEPPTLAVSPSGSQQSITSI 312
G P + RPA+ E + ++ SG Q+ + +I
Sbjct: 439 GTPISTGRPATVEDTSASLPLSGMQEELHTI 469
>AM158085-1|CAJ43389.1| 171|Apis mellifera globin 1 protein.
Length = 171
Score = 22.2 bits (45), Expect = 4.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 391 IDESTGITRTQMKEFREAFRLFDKD 465
ID++TG+T Q K + + + KD
Sbjct: 18 IDQATGLTERQKKLVQNTWAVVRKD 42
>AM158084-1|CAJ43388.1| 171|Apis mellifera globin 1 protein.
Length = 171
Score = 22.2 bits (45), Expect = 4.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 391 IDESTGITRTQMKEFREAFRLFDKD 465
ID++TG+T Q K + + + KD
Sbjct: 18 IDQATGLTERQKKLVQNTWAVVRKD 42
>AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9
methyltransferase protein.
Length = 683
Score = 21.8 bits (44), Expect = 5.3
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = -1
Query: 285 RRADGQGWGLFTCRS 241
R A+G+GWG+ T ++
Sbjct: 501 RTANGRGWGVKTMKT 515
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 21.4 bits (43), Expect = 7.0
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 136 NNFFADSPLVNHIKGIMTRQTSNSGREPGPPDESS 240
N++ + L H++G +T S PDESS
Sbjct: 121 NHYTSHQHLRTHLRGTLTVNVSVLLLSLASPDESS 155
>AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.4 bits (43), Expect = 7.0
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = +1
Query: 220 GPPDESSRPASKEPPTLAVSPSGSQQSITSISPS 321
GP S A L+ SPSG +++ P+
Sbjct: 67 GPNSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPN 100
>AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.4 bits (43), Expect = 7.0
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = +1
Query: 220 GPPDESSRPASKEPPTLAVSPSGSQQSITSISPS 321
GP S A L+ SPSG +++ P+
Sbjct: 67 GPNSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPN 100
>AF080430-1|AAC28863.2| 208|Apis mellifera ribosomal protein S8
protein.
Length = 208
Score = 21.4 bits (43), Expect = 7.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 316 PSRSQRQVTFLKPAANTNL 372
P R +R+ +PAANT L
Sbjct: 20 PIRKKRKFELGRPAANTKL 38
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 21.0 bits (42), Expect = 9.2
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 163 PEANQRRSCSPRRIFYLLSRRVTAGVHTPRPIVPFSL 53
PE N R+S P R S VTA + I P +L
Sbjct: 909 PERNVRQSMMPTRYSTTKSSAVTA-TNASSMIAPVAL 944
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,781
Number of Sequences: 438
Number of extensions: 3403
Number of successful extensions: 21
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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