Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2128
(650 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M16696-1|AAA51764.1| 189|Homo sapiens APOD protein. 77 4e-14
J02611-1|AAB59517.1| 189|Homo sapiens APOD protein. 77 4e-14
CR541773-1|CAG46572.1| 189|Homo sapiens APOD protein. 77 4e-14
CR456838-1|CAG33119.1| 189|Homo sapiens APOD protein. 77 4e-14
BT019861-1|AAV38664.1| 189|Homo sapiens apolipoprotein D protein. 77 4e-14
BT019860-1|AAV38663.1| 189|Homo sapiens apolipoprotein D protein. 77 4e-14
BC007402-1|AAH07402.1| 189|Homo sapiens apolipoprotein D protein. 77 4e-14
S80440-1|AAB35919.1| 98|Homo sapiens apolipoprotein D protein. 45 3e-04
>M16696-1|AAA51764.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 77.4 bits (182), Expect = 4e-14
Identities = 55/147 (37%), Positives = 70/147 (47%), Gaps = 2/147 (1%)
Frame = +1
Query: 130 YQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKNVHI-IDGVKKYIEGTAKLTDDA 303
Y G WYEI K P E NG+C A Y L E +KV N + DG IEG A +
Sbjct: 42 YLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELRADGTVNQIEGEATPVN-L 99
Query: 304 NKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSXNKKLE 483
+ AKL V KF +LATDY NYA+ Y+C + H F WIL+ N L
Sbjct: 100 TEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSCTC-IIQLFHVDFAWILARNPNLP 156
Query: 484 GDXXTAVDNFIKEHSKEIDSSKLVHTD 564
+ ++ N + S ID K+ TD
Sbjct: 157 PETVDSLKNILT--SNNIDVKKMTVTD 181
>J02611-1|AAB59517.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 77.4 bits (182), Expect = 4e-14
Identities = 55/147 (37%), Positives = 70/147 (47%), Gaps = 2/147 (1%)
Frame = +1
Query: 130 YQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKNVHI-IDGVKKYIEGTAKLTDDA 303
Y G WYEI K P E NG+C A Y L E +KV N + DG IEG A +
Sbjct: 42 YLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELRADGTVNQIEGEATPVN-L 99
Query: 304 NKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSXNKKLE 483
+ AKL V KF +LATDY NYA+ Y+C + H F WIL+ N L
Sbjct: 100 TEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSCTC-IIQLFHVDFAWILARNPNLP 156
Query: 484 GDXXTAVDNFIKEHSKEIDSSKLVHTD 564
+ ++ N + S ID K+ TD
Sbjct: 157 PETVDSLKNILT--SNNIDVKKMTVTD 181
>CR541773-1|CAG46572.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 77.4 bits (182), Expect = 4e-14
Identities = 55/147 (37%), Positives = 70/147 (47%), Gaps = 2/147 (1%)
Frame = +1
Query: 130 YQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKNVHI-IDGVKKYIEGTAKLTDDA 303
Y G WYEI K P E NG+C A Y L E +KV N + DG IEG A +
Sbjct: 42 YLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELRADGTVNQIEGEATPVN-L 99
Query: 304 NKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSXNKKLE 483
+ AKL V KF +LATDY NYA+ Y+C + H F WIL+ N L
Sbjct: 100 TEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSCTC-IIQLFHVDFAWILARNPNLP 156
Query: 484 GDXXTAVDNFIKEHSKEIDSSKLVHTD 564
+ ++ N + S ID K+ TD
Sbjct: 157 PETVDSLKNILT--SNNIDVKKMTVTD 181
>CR456838-1|CAG33119.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 77.4 bits (182), Expect = 4e-14
Identities = 55/147 (37%), Positives = 70/147 (47%), Gaps = 2/147 (1%)
Frame = +1
Query: 130 YQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKNVHI-IDGVKKYIEGTAKLTDDA 303
Y G WYEI K P E NG+C A Y L E +KV N + DG IEG A +
Sbjct: 42 YLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELRADGTVNQIEGEATPVN-L 99
Query: 304 NKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSXNKKLE 483
+ AKL V KF +LATDY NYA+ Y+C + H F WIL+ N L
Sbjct: 100 TEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSCTC-IIQLFHVDFAWILARNPNLP 156
Query: 484 GDXXTAVDNFIKEHSKEIDSSKLVHTD 564
+ ++ N + S ID K+ TD
Sbjct: 157 PETVDSLKNILT--SNNIDVKKMTVTD 181
>BT019861-1|AAV38664.1| 189|Homo sapiens apolipoprotein D protein.
Length = 189
Score = 77.4 bits (182), Expect = 4e-14
Identities = 55/147 (37%), Positives = 70/147 (47%), Gaps = 2/147 (1%)
Frame = +1
Query: 130 YQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKNVHI-IDGVKKYIEGTAKLTDDA 303
Y G WYEI K P E NG+C A Y L E +KV N + DG IEG A +
Sbjct: 42 YLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELRADGTVNQIEGEATPVN-L 99
Query: 304 NKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSXNKKLE 483
+ AKL V KF +LATDY NYA+ Y+C + H F WIL+ N L
Sbjct: 100 TEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSCTC-IIQLFHVDFAWILARNPNLP 156
Query: 484 GDXXTAVDNFIKEHSKEIDSSKLVHTD 564
+ ++ N + S ID K+ TD
Sbjct: 157 PETVDSLKNILT--SNNIDVKKMTVTD 181
>BT019860-1|AAV38663.1| 189|Homo sapiens apolipoprotein D protein.
Length = 189
Score = 77.4 bits (182), Expect = 4e-14
Identities = 55/147 (37%), Positives = 70/147 (47%), Gaps = 2/147 (1%)
Frame = +1
Query: 130 YQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKNVHI-IDGVKKYIEGTAKLTDDA 303
Y G WYEI K P E NG+C A Y L E +KV N + DG IEG A +
Sbjct: 42 YLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELRADGTVNQIEGEATPVN-L 99
Query: 304 NKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSXNKKLE 483
+ AKL V KF +LATDY NYA+ Y+C + H F WIL+ N L
Sbjct: 100 TEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSCTC-IIQLFHVDFAWILARNPNLP 156
Query: 484 GDXXTAVDNFIKEHSKEIDSSKLVHTD 564
+ ++ N + S ID K+ TD
Sbjct: 157 PETVDSLKNILT--SNNIDVKKMTVTD 181
>BC007402-1|AAH07402.1| 189|Homo sapiens apolipoprotein D protein.
Length = 189
Score = 77.4 bits (182), Expect = 4e-14
Identities = 55/147 (37%), Positives = 70/147 (47%), Gaps = 2/147 (1%)
Frame = +1
Query: 130 YQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKNVHI-IDGVKKYIEGTAKLTDDA 303
Y G WYEI K P E NG+C A Y L E +KV N + DG IEG A +
Sbjct: 42 YLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQELRADGTVNQIEGEATPVN-L 99
Query: 304 NKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSXNKKLE 483
+ AKL V KF +LATDY NYA+ Y+C + H F WIL+ N L
Sbjct: 100 TEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSCTC-IIQLFHVDFAWILARNPNLP 156
Query: 484 GDXXTAVDNFIKEHSKEIDSSKLVHTD 564
+ ++ N + S ID K+ TD
Sbjct: 157 PETVDSLKNILT--SNNIDVKKMTVTD 181
>S80440-1|AAB35919.1| 98|Homo sapiens apolipoprotein D protein.
Length = 98
Score = 44.8 bits (101), Expect = 3e-04
Identities = 30/84 (35%), Positives = 40/84 (47%)
Frame = +1
Query: 313 AKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSXNKKLEGDX 492
AKL V KF +LATDY NYA+ Y+C + H F WIL+ N L +
Sbjct: 12 AKLEV--KFSWFMPSAPYWILATDYENYALVYSCTC-IIQLFHVDFAWILARNPNLPPET 68
Query: 493 XTAVDNFIKEHSKEIDSSKLVHTD 564
++ N + S ID K+ TD
Sbjct: 69 VDSLKNILT--SNNIDVKKMTVTD 90
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,314,326
Number of Sequences: 237096
Number of extensions: 1382868
Number of successful extensions: 3112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3104
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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