Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2125
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       45   8e-07
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   8.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   8.2  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 44.8 bits (101), Expect = 8e-07
 Identities = 19/41 (46%), Positives = 25/41 (60%)
 Frame = +1

Query: 553 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 675
           PI+ FE A   + V   +K  GYK+PTP+Q    PI M+GR
Sbjct: 194 PIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGR 234


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -1

Query: 416 PIWASHVLPSREFFFP 369
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 250 TGIIAVETVVPNLEEATNSA 309
           T + A   V P +EE TN+A
Sbjct: 412 TALGAAALVAPGMEEPTNTA 431


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +3

Query: 39  CQLNNILSSIRP 74
           C+LN+IL ++RP
Sbjct: 246 CKLNDILLTVRP 257


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -1

Query: 416 PIWASHVLPSREFFFP 369
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +3

Query: 39  CQLNNILSSIRP 74
           C+LN+IL ++RP
Sbjct: 246 CKLNDILLTVRP 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,322
Number of Sequences: 438
Number of extensions: 3412
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)