Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2120
         (370 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM412310-1|CAL80781.1|  646|Homo sapiens jakmip1 protein.              29   4.7  
AM412309-1|CAL80780.1|  569|Homo sapiens jakmip1 protein.              29   4.7  
AM412307-1|CAL80778.1|  831|Homo sapiens jakmip1 protein.              29   4.7  

>AM412310-1|CAL80781.1|  646|Homo sapiens jakmip1 protein.
          Length = 646

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = +1

Query: 67  QVLRIED*IQFRRYILKLIDQKYLFYLISRDLHFTIFP 180
           ++  +ED ++F++  LK +++K+LF  +   L F ++P
Sbjct: 609 RIRELEDKLEFQKRHLKELEEKFLFLFLFFSLAFILWP 646


>AM412309-1|CAL80780.1|  569|Homo sapiens jakmip1 protein.
          Length = 569

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = +1

Query: 67  QVLRIED*IQFRRYILKLIDQKYLFYLISRDLHFTIFP 180
           ++  +ED ++F++  LK +++K+LF  +   L F ++P
Sbjct: 532 RIRELEDKLEFQKRHLKELEEKFLFLFLFFSLAFILWP 569


>AM412307-1|CAL80778.1|  831|Homo sapiens jakmip1 protein.
          Length = 831

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = +1

Query: 67  QVLRIED*IQFRRYILKLIDQKYLFYLISRDLHFTIFP 180
           ++  +ED ++F++  LK +++K+LF  +   L F ++P
Sbjct: 794 RIRELEDKLEFQKRHLKELEEKFLFLFLFFSLAFILWP 831


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,330,765
Number of Sequences: 237096
Number of extensions: 710320
Number of successful extensions: 623
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2363825726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)