Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2116
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.3  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   5.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.0  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   7.0  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 322 YHHHGHAEFGQQHVRY 275
           +HHH H     QH+ Y
Sbjct: 351 HHHHHHQTQSLQHLHY 366


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 334 GQGAFGNMCRGGRMFXP 384
           G G FG++CRG     P
Sbjct: 640 GGGEFGDVCRGKLKLPP 656


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 6/16 (37%), Positives = 7/16 (43%)
 Frame = +3

Query: 273 GYRTCCCPNSACPWWW 320
           G+    C N    WWW
Sbjct: 353 GFLQPVCQNEMNKWWW 368


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +2

Query: 140 PPVRIQGAHTSGTW 181
           PP R++ +++SG W
Sbjct: 36  PPSRVEFSNSSGAW 49


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +2

Query: 140 PPVRIQGAHTSGTW 181
           PP R++ +++SG W
Sbjct: 36  PPSRVEFSNSSGAW 49


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 252 VTSLLAHAVGLPRVLGHRNVNIIDQVP 172
           V  +L+H  G PR++   +    DQ P
Sbjct: 330 VAFMLSHPFGTPRIMSSFDFQSKDQGP 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,506
Number of Sequences: 438
Number of extensions: 2725
Number of successful extensions: 24
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)