Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2108
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    25   1.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   4.0  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   5.3  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   5.3  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   5.3  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   7.1  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   7.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   7.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.3  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 552 LSNESXHQNPRLSWNRTHNNETV*KYCA*INYNNH 448
           LSN++ H N    +N  +NN     Y    NYNN+
Sbjct: 318 LSNKTIHNNNNYKYNYNNNNYNNNNYNN--NYNNN 350


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 639 KNTSXVKHFQLXHNSXXAFQMTFRHLHK 722
           +NT+     Q   ++  AF   FR +HK
Sbjct: 463 QNTAFENQLQFVSDAVMAFAYAFRDMHK 490


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 552 LSNESXHQNPRLSWNRTHNN 493
           LSN++ H N    +N  +NN
Sbjct: 85  LSNKTIHNNNNYKYNYNNNN 104


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 552 LSNESXHQNPRLSWNRTHNN 493
           LSN++ H N    +N  +NN
Sbjct: 85  LSNKTIHNNNNYKYNYNNNN 104


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 552 LSNESXHQNPRLSWNRTHNN 493
           LSN++ H N    +N  +NN
Sbjct: 85  LSNKTIHNNNNYKYNYNNNN 104


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 552 LSNESXHQNPRLSWNRTHNN 493
           LSN + H N    +N  +NN
Sbjct: 85  LSNRTIHNNNNYKYNYNNNN 104


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -1

Query: 747 PXTCINCLAYVNDGKSFEMLXXSYVXIES 661
           P  C N  AY++D   + ++  S+   +S
Sbjct: 181 PNNCDNTYAYISDLSGYALVVYSWAKNDS 209


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 34  LLHAAHPADQQTRLWRG 84
           LLH   P D   RLW G
Sbjct: 463 LLHLIFPPDIAKRLWLG 479


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 292  ALXVDFILIVIICVNVSPKYGSD 360
            A+ V  + +++ICV     +GSD
Sbjct: 1594 AILVIIVAVIVICVLRGKGHGSD 1616


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,851
Number of Sequences: 438
Number of extensions: 3584
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)