Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2107
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    25   0.91 
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    25   0.91 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   3.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   8.5  

>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 577 VAGKYFVDFEIPDDVPCFVALHVSHVSA*RVHA 675
           V  KY +++ +PD +PC   LH+S   A  + A
Sbjct: 25  VVAKY-MEYLMPDIMPCADELHISEDIATNIQA 56


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 577 VAGKYFVDFEIPDDVPCFVALHVSHVSA*RVHA 675
           V  KY +++ +PD +PC   LH+S   A  + A
Sbjct: 25  VVAKY-MEYLMPDIMPCADELHISEDIATNIQA 56


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 269 PILIDNGLAILENEKIERHIMKSVP 343
           PI +D+G+ IL++ K E   + S+P
Sbjct: 341 PIQLDDGIDILDDVKCEDERVISIP 365


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 429 RKDEQKSAALRAHLGRID 482
           +++EQ  + +RAHL R+D
Sbjct: 497 QQEEQTQSRVRAHLKRLD 514


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 682 QFLRERVKLIHVIHVTPQSTE 620
           ++LR R +L HV+  T Q+ E
Sbjct: 11  RYLRNRNQLQHVLEETQQALE 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,468
Number of Sequences: 438
Number of extensions: 4554
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)